Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq552 282 6e-71 seq1707 102 1e-16 seq502 100 4e-16 >seq552 Length=297145 Score = 282 bits (312), Expect = 6e-71 Identities = 585/865 (68%), Gaps = 12/865 (1%) Strand=Plus/Minus Query 46367 AAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAACGGATTAGTAACAT 46426 ||||||||| |||||||||||| || || ||||||||||| || ||||| | | Sbjct 246656 AAAAATTAGCTTTGCCTTCCAAAGAAATGTTTTCCATAAATGGGAAAGGATTTTTCGTTT 246597 Query 46427 TATAAAtttttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACG 46486 ||||| |||| || ||| ||| | | ||| || || ||||| || || || ||| Sbjct 246596 TATAATACTTTTCAAGTCCCAATGCCACCAACAGCCTGTCGGCAACAAACTCAATGTACT 246537 Query 46487 TTTTCATCATTTCACAATTCATTCCTATGAGTTTGAC-CGGTAGAGCCTCCGTAAGAAAC 46545 | ||| | ||||| || || | | ||| ||||| ||| | | || Sbjct 246536 CTGCCATGGAGTGGCAATTGATACCCAACAAAC-GACACGGTAAGGCCCCTATCCAGAAT 246478 Query 46546 TCTTGTTCAATAGTGACAGCATCCGATATTATCGATGTTACTGTTTCCTCACTTGGTGGA 46605 |||| || || | || ||||| ||| ||| | || ||| | ||||| Sbjct 246477 TCTTTCTCTATGGCAACCGCATCACATACAATCTCGCTAACCCGTTCTCCGCTTGGCCTC 246418 Query 46606 TGCATCAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTA 46665 ||| | ||||| ||| || | |||||||||||||| ||||||||||| || || | Sbjct 246417 TGCCTTAAATGCGAAAAAATCAGGCATGCAAAATCACAGTGAAGGCCTTCGTCCCTGGAA 246358 Query 46666 ATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATA 46725 || || || ||||||||||| || ||||||||||| || | || |||| |||||| || Sbjct 246357 ATCAACTCATTAGAAAATGTCAGACCAGGCATTAGGCCTCTTTTCTTGATCCAAAAAATT 246298 Query 46726 GCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCT 46785 | || || | ||||| |||||||| || || |||||||| || || |||| ||| || Sbjct 246297 GATGCAAACGCACCAGAGAAGAATATCCCCTCGACAGCCGCAAACGCAACAACTCTTTCA 246238 Query 46786 CC----GTAACTG--GCATCATTATGAATCCACCTTTGA--GCCCAATCAGCCTTTTTCT 46837 || ||| ||| | | |||| ||||| ||| | ||||| | |||||||| | Sbjct 246237 CCAAAAGTAGCTGTAGAACTTTTATCCATCCA--TTTAAATGCCCACTGTGCCTTTTTTT 246180 Query 46838 TTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAA 46897 | ||||| || | ||||| |||||||| || | | || || | || | | Sbjct 246179 TAACACAGGGGAAAGTTTCAATAGCATTGAAAACCTTCTCCTTCTCTCCTGGGTCCCTGA 246120 Query 46898 CATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAA 46957 || || || ||||| |||| |||||||| || ||||||||||| || || || |||| Sbjct 246119 TGTAAGTGTCAATTAACAGACAGTACATTTCGGAGTGAATGTTTTCCATGGCGATTTGAA 246060 Query 46958 ATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAAT 47017 ||||||| ||||||||||| || | || |||| ||| | | || | ||| ||| | Sbjct 246059 ATCCGTAGAAACATCTTGCCTCGGGAACTTGTATCTCCCGATAGAACCTTTCGACCAAGT 246000 Query 47018 TCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATT 47077 |||| ||||| |||||||| || || || || |||| |||||| ||| || | || Sbjct 245999 TCTCTCCAACTATGCCATCACTGGCTGCGAAGAACGCCAGAACATGTGAAATGAACTGTT 245940 Query 47078 TTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAG 47137 |||| | | ||||||| | ||| || | || ||| | || |||||||| Sbjct 245939 TTTCTTGAGAGTTCAGTTTTTCCCAATCGACTAAGTCATTTCCCAGGTCCACTTCTTCGA 245880 Query 47138 CTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATTGGATCG 47197 | ||||| || || ||| | | ||| || || | |||||||| ||| | | | | | Sbjct 245879 CCGTCCAAAAGGATGCCACAGATTTCTTGTAGAATTTCCATATGTCAGGGAACTTTAGTG 245820 Query 47198 GAAAAATAACAAATCTATTTGGATT 47222 |||| | |||||||| || ||||| Sbjct 245819 GAAACAAGACAAATCTGTTGGGATT 245795 >seq1707 Length=334361 Score = 102 bits (112), Expect = 1e-16 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| || ||||| ||||||||||| || ||| ||| | || || || | | || Sbjct 217328 TCCAGCCATAGAAGTGCATGCTTGTCAGCTTGCCATAGTTAGGTTCAGCAAAGAACACAT 217387 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 | | |||||||||||||| ||||| |||||||| ||||| ||||| | ||| | ||| Sbjct 217388 TGAATGACTGACTTTGATCAATGAATGCTCCTCTGTCAGCTGCCATATCTATGAGAGTCC 217447 Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGG 75612 | || | ||||||||||| || ||| | | | |||| | |||||| || Sbjct 217448 TCTGGGAAATTTCCCAAACTGTCTTGTACAATGGTTTAAGATCATCAGG 217496 Score = 93.3 bits (102), Expect = 6e-14 Identities = 168/243 (69%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 76877 CCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCC 76936 || ||||| || || ||| |||||| |||||| ||| || ||||| ||||| Sbjct 224294 CCAATTCCACCAGCTGATTTTGAGATTCTAGCACAAGTCATCAGCGTTTCATAAATGCCA 224353 Query 76937 TCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTT 76996 || || || ||||| ||| | || | |||||||| |||| || | | | ||| Sbjct 224354 TCAATGCTGTCATCTGACATTGTCAGCAAGAAACAGCTTGACAGCTGTGGTTTACAAGTG 224413 Query 76997 CCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTAT 77056 || | ||| || | ||| || || ||||| |||||||| || ||||| | | ||| || Sbjct 224414 CCAGAATTGAAAAGTGTCGGTGAGGCATGTGTGAACCACTTCTCAGACATCAAATTATAA 224473 Query 77057 GTTTCAATAACTGCTTCTATATCC-CATTGATGAATTCCTACAGCGACACGCATCAACAT 77115 |||||||| | || || || || | ||| || ||||| || | || ||||||||||| Sbjct 224474 GTTTCAATGGCAGCATCAATGTCATCCTTG-TGGATTCCAACTGAAACTCGCATCAACAT 224532 Query 77116 ATG 77118 || Sbjct 224533 GTG 224535 >seq502 Length=1712060 Score = 100 bits (110), Expect = 4e-16 Identities = 141/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGT 46518 ||||| || ||||| ||||| || ||| |||||||| | ||||| || |||||| Sbjct 405986 AGTCTGTCAGCAACAAATTCAATGTACTGTTTCATCAAGGTATGGTTCATGCCAATGAGT 405927 Query 46519 TTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATC 46578 || || || || || || ||||| || |||||||||||| ||||||||||| ||||| Sbjct 405926 TTAACTGGGAGGGCTTCTGTAAGGAATTCTTGTTCAATAATGACAGCATCCATGATTATT 405867 Query 46579 GATGT--TACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAA 46636 ||| | || ||| || | |||| | | ||| | ||||| ||||| |||| Sbjct 405866 GATTTGATAACTTTTTCTGA--TGGTTTGTTGACCAAGTAGGAGAACATCAAACAGGCAA 405809 Query 46637 AATCACAATGAAGGCC 46652 | ||||||||||| || Sbjct 405808 AGTCACAATGAAGACC 405793 Score = 100 bits (110), Expect = 4e-16 Identities = 141/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGT 46518 ||||| || ||||| ||||| || ||| |||||||| | ||||| || |||||| Sbjct 410238 AGTCTGTCAGCAACAAATTCAATGTACTGTTTCATCAAGGTATGGTTCATGCCAATGAGT 410179 Query 46519 TTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATC 46578 || || || || || || ||||| || |||||||||||| ||||||||||| ||||| Sbjct 410178 TTAACTGGGAGGGCTTCTGTAAGGAATTCTTGTTCAATAATGACAGCATCCATGATTATT 410119 Query 46579 GATGT--TACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAA 46636 ||| | || ||| || | |||| | | ||| | ||||| ||||| |||| Sbjct 410118 GATTTGATAACTTTTTCTGA--TGGTTTGTTGACCAAGTAGGAGAACATCAAACAGGCAA 410061 Query 46637 AATCACAATGAAGGCC 46652 | ||||||||||| || Sbjct 410060 AGTCACAATGAAGACC 410045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712917173722560