Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq552 208 8e-49 seq502 84.2 2e-11 >seq552 Length=297145 Score = 208 bits (230), Expect = 8e-49 Identities = 371/538 (69%), Gaps = 15/538 (3%) Strand=Plus/Minus Query 23509 CATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAAT 23568 |||||||||||||| || |||||||| ||||| |||||| |||||||||||||| | Sbjct 246393 CATGCAAAATCACAGTGAAGGCCTTCGTCCCTGGAAATCAACTCATTAGAAAATGTCAGA 246334 Query 23569 CCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAA 23628 || ||||||| |||| ||| || |||||||| |||| ||||| | || || ||||| Sbjct 246333 CCAGGCATTAGGCCTCTTTTCTTGATCCAAAAAATTGATGCAAACGCACCAGAGAAGAAT 246274 Query 23629 ATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAA---TCA 23685 || ||||| ||||||||||| || |||| | | |||||| || || || || | | Sbjct 246273 ATCCCCTCGACAGCCGCAAACGCAACAACTCTTTCACCAAAAGTAGCTGTAGAACTTTTA 246214 Query 23686 GAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCT 23745 |||||||| || ||| | ||||| ||| ||||| | |||||||| || Sbjct 246213 TCCATCCATTTAAATGCCCACTGTGCCTTTTTTTTAACACAGGGGAAAGTTTCAATAGCA 246154 Query 23746 TTTAAGAGAAAAGTTTTTTCTTCATT-----ATCTGTTATATATGTATCAATTAGTAAAC 23800 || ||||| || | |||| | || | || || || ||||||| | || Sbjct 246153 TT-----GAAAACCTTCTCCTTCTCTCCTGGGTCCCTGATGTAAGTGTCAATTAACAGAC 246099 Query 23801 TATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTT 23860 |||||||| || ||||| ||||| || || || ||||| || || |||||||| || | Sbjct 246098 AGTACATTTCGGAGTGAATGTTTTCCATGGCGATTTGAAATCCGTAGAAACATCTTGCCT 246039 Query 23861 CAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCAC 23920 | | | ||| | || | | || |||| | || || || ||| || ||||||| Sbjct 246038 CGGGAACTTGTATCTCCCGATAGAACCTTTCGACCAAGTTCTCTCCAACTATGCCATCAC 245979 Query 23921 TAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTT 23980 | || || ||||| || ||||||| | || || ||| |||| | || | ||||| Sbjct 245978 TGGCTGCGAAGAACGCCAGAACATGTGAAATGAACTGTTTTTCTTGAGAGTTCAGTTTTT 245919 Query 23981 TCCAATC-ATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCA 24037 |||||| | ||| || ||| | || ||||| || || |||||||| ||||| Sbjct 245918 CCCAATCGACTAA-GTCATTTCCCAGGTCCACTTCTTCGACCGTCCAAAAGGATGCCA 245862 >seq502 Length=1712060 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 23824 TCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAA 23883 ||||| || || || || ||||| |||||||| || || | | || || || | Sbjct 404521 TCAATTGCTATTTGGAAGCCATAGAAACATCTTGCCTCTGGAACCTGGACTTCCTGGCTG 404462 Query 23884 AATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACA 23943 || | | | | || ||||| || ||||| ||||| |||||||| ||||||||||||||| Sbjct 404461 AAACACTCAACCAAGTTTTCATTGACAATGCCATCGCTAGCAGCGAAGAAAGCAAGAACA 404402 Query 23944 TATTTTATAAAATGTCTTTCATCA 23967 | || || |||| ||||||||| Sbjct 404401 TGCTTGATGAAATACCTTTCATCA 404378 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 23824 TCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAA 23883 ||||| || || || || ||||| |||||||| || || | | || || || | Sbjct 408772 TCAATTGCTATTTGGAAGCCATAGAAACATCTTGCCTCTGGAACCTGGACTTCCTGGCTG 408713 Query 23884 AATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACA 23943 || | | | | || ||||| || ||||| ||||| |||||||| ||||||||||||||| Sbjct 408712 AAACACTCAACCAAGTTTTCATTGACAATGCCATCGCTAGCAGCGAAGAAAGCAAGAACA 408653 Query 23944 TATTTTATAAAATGTCTTTCATCA 23967 | || || |||| ||||||||| Sbjct 408652 TGCTTGATGAAATACCTTTCATCA 408629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521475399546200