Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orbicella_20faveolata_20[refseq_20GCF_5F002042975.1_202017-03-20] 1,933 sequences; 485,548,939 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq754 140 8e-28 seq506 96.9 8e-15 >seq754 Length=972672 Score = 140 bits (154), Expect = 8e-28 Identities = 163/218 (75%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || ||||||||||| ||||| || ||||| || ||||| ||||| || || || || Sbjct 126286 CAGATTTTCGTGAAGACTCTGACCGGAAAGACCATCACGCTCGAAGTCGA--GCCGAGCG 126229 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || |||| || || || || ||||||||| ||||||||||| || || || ||||| | Sbjct 126228 ACTCCATTGAAAATGTGAAGACAAAGATTCAAGACAAAGAAGGCATTCCCCCAGACCAAC 126169 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || |||||||||||||| ||| | |||||||| | |||||| ||| || || Sbjct 126168 AGAGGCTGATCTTCGCCGGAAAGCAGTTGGAAGATGGTCGCACTCTTAGCGACTACAATA 126109 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 | || || || || || || ||||| |||||| | ||| Sbjct 126108 TTCAGAAGGAGTCGACCCTTCATCTGGTTTTGCGTCTC 126071 Score = 136 bits (150), Expect = 1e-26 Identities = 157/210 (75%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCA 177980 || || ||||||||||| || || || ||||| ||||| || || || || |||| Sbjct 126514 CAGATCTTCGTGAAAACCCTGACCGGCAAAACCATCACGCTTGAAGTCGAGCCAAGC--- 126458 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||| |||| || || || || ||||| |||||||||||||| ||||| || |||||| Sbjct 126457 GACTCCATTGAAAATGTGAAGACGAAGATCCAGGACAAAGAAGGTATCCCCCCAGACCAG 126398 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || | | |||||||||||||| ||| | |||||||| | ||||| ||| || ||| Sbjct 126397 CAGAGGTTGATCTTCGCCGGAAAGCAGTTGGAAGATGGTCGCACTCTCAGCGACTACAAC 126338 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTT 178130 | |||||||| || || || || |||||| Sbjct 126337 ATTCAAAAAGAGTCCACTCTTCACCTTGTT 126308 Score = 132 bits (146), Expect = 1e-25 Identities = 156/210 (74%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 || || |||||||| ||||| || || ||||| ||||| || || || ||| ||| Sbjct 126970 CAGATCTTCGTGAAGACTCTGACCGGTAAAACTATCACTCTTGAAGTTGAACCAAGC--- 126914 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 |||| |||||||| || || |||||||| ||||||||||| ||||| || || || Sbjct 126913 GACAGTATCGAGAATGTGAAGACGAAGATTCAAGACAAAGAAGGCATCCCACCCGATCAA 126854 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || || || ||||| || ||||| || |||||||| | ||||| ||||||||| Sbjct 126853 CAGCGTCTCATTTTCGCTGGCAAACAACTTGAAGATGGCCGTACTCTGAGTGATTATAAC 126794 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTT 178130 | || ||||| || || || || |||||| Sbjct 126793 ATTCAGAAAGAGTCCACTCTTCACCTTGTT 126764 Score = 122 bits (134), Expect = 2e-22 Identities = 159/218 (73%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || |||||||| || ||| | || ||||| || ||||| || || || || || || Sbjct 126742 CAGATTTTCGTTAAGACTTTGACCGGAAAGACCATCACGCTTGAAGTTGA--GCCGAGCG 126685 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || |||| ||||| || || |||||| || ||||||||||| |||||||| ||||| | Sbjct 126684 ACTCCATTGAGAATGTGAAGACAAAGATCCAAGACAAAGAAGGCATCCCTCCCGACCAAC 126625 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | |||| |||||||| || || || | |||||||| | |||||| ||| || || Sbjct 126624 AGAGACTGATCTTCGCTGGCAAGCAATTGGAAGATGGTCGCACTCTTAGCGACTACAATA 126565 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 | || || || || || || ||||| || ||| | ||| Sbjct 126564 TTCAGAAGGAGTCGACCCTTCATCTGGTGTTGCGTCTC 126527 >seq506 Length=2789561 Score = 96.9 bits (106), Expect = 8e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 178022 AGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAG 178081 |||||| || || ||||||||| || | || || || || |||||||||||||||||| | Sbjct 445475 AGGAATTCCACCTGACCAGCAAAGATTGATTTTTGCTGGTAAACAGCTCGAAGATGGACG 445534 Query 178082 GACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||||| ||||||||| |||| || || || || || |||||||| | |||| || Sbjct 445535 CACTCTTAGTGATTATAACATCCAGAAGGAGTCCACTCTTCATCTTGTGCTTCGACTGAG 445594 Query 178142 A 178142 | Sbjct 445595 A 445595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203701387716002