Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq8469 140 3e-28 seq937 134 1e-26 seq503 116 4e-21 >seq8469 Length=53876 Score = 140 bits (154), Expect = 3e-28 Identities = 210/296 (71%), Gaps = 2/296 (1%) Strand=Plus/Plus Query 17226 GGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGG 17285 |||| | || || || || || | | ||||||||| |||||||| |||||||| |||| Sbjct 18787 GGTCTCTGATGTAGGTGTCAATCAACAAGCTGTACATCTCGGAGTGAATGTTCTCGATGG 18846 Query 17286 CTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTT 17345 | ||||| || ||||| ||||| || || || | | ||||| ||| | ||| || | Sbjct 18847 CGATCTGGAACCCGTAGAAGCACCGCGCCTCGGGCACCTGAACCTCCTGGCTGAACCGCT 18906 Query 17346 CCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAA 17405 || | || || |||||||||||||||||||| |||||||| |||||||| | || | Sbjct 18907 CCACGAGGTTCTCGTTCACGATGCCGTCGCTGGCGGCGAAGAACGCCAAGACGTGGGAGA 18966 Query 17406 TGAAATATTTTTCGTCCGG-TGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCC 17464 |||| | | |||||||| | | | || | |||||| | || ||||| | || Sbjct 18967 TGAAGTGCCTCTCGTCCGGCTTGAGGGACTC-CCAGTCTGGGAGGTCCTTGGAGAGGTCG 19025 Query 17465 ACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATC 17520 || || ||| ||||| || ||| ||||||| || ||||| | ||| || || Sbjct 19026 ACCTCCTCGACCGTCCAGAACGACGCCTCTGCCTTCTTGTACATGTCCCAGATGTC 19081 >seq937 Length=97168 Score = 134 bits (148), Expect = 1e-26 Identities = 209/296 (71%), Gaps = 2/296 (1%) Strand=Plus/Plus Query 17226 GGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGG 17285 |||| | || || || ||||| | | ||||||||| || ||||| |||||||| |||| Sbjct 93993 GGTCTCTGATGTAGGTGTCGATCAACAAGCTGTACATCTCTGAGTGAATGTTCTCGATGG 94052 Query 17286 CTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTT 17345 | ||||| || ||||| ||||| || || |||| | ||||| ||| | ||| || | Sbjct 94053 CGATCTGGAACCCGTAGAAGCACCGCGCCTCCGGCACCTGAACCTCCTGGCTGAACCGCT 94112 Query 17346 CCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAA 17405 || | || || |||||||||||||||||||| |||||||| || ||||| | || | Sbjct 94113 CCACGAGGTTCTCGTTCACGATGCCGTCGCTGGCGGCGAAGAAGGCCAAGACGTGGGAGA 94172 Query 17406 TGAAATATTTTTCGTCCGG-TGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCC 17464 |||| | | || ||||| | | | || | |||||| | || ||||| | || Sbjct 94173 TGAAGTGCCTCTCATCCGGCTTGAGGGACTC-CCAGTCTGGGAGGTCCTTGGAGAGGTCG 94231 Query 17465 ACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATC 17520 || || ||| ||||| || ||| ||||||| || ||||| | ||| || || Sbjct 94232 ACCTCCTCGACCGTCCAGAACGACGCCTCTGCCTTCTTGTACATGTCCCAGATGTC 94287 >seq503 Length=134583 Score = 116 bits (128), Expect = 4e-21 Identities = 205/296 (69%), Gaps = 2/296 (1%) Strand=Plus/Plus Query 17226 GGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGG 17285 |||| | || || || ||||| | | |||||||||||| ||||| ||||||||||||| Sbjct 11092 GGTCTCTGATGTAGGTGTCGATCAACAAGCTGTACATTTCCGAGTGAATGTTCTCCATGG 11151 Query 17286 CTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTC-CACGTAGAATCGT 17344 | |||||| |||||||||||||| || || || ||||| || ||| || || Sbjct 11152 TGAACTGAAACCCGTAAAAGCATCGCGCCTCAAGTACCTGAACCTCTTGAGTA-AAACGC 11210 Query 17345 TCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTA 17404 | || |||||||| || ||||||||||| || ||||| || ||||| | || Sbjct 11211 TGAAGGAGGTTTTCGTTTACAATGCCGTCGCTGGCCGCGAAGAAAGCCAAAACGTGAGAG 11270 Query 17405 ATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCC 17464 ||||| | | | || ||| | | ||| ||||| || || || || | ||| Sbjct 11271 ATGAATTTTCTCTCCTCCCGCTTGAGAGATTCCCAGTGTGGTAGGTCCTTCGAGAGATCA 11330 Query 17465 ACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATC 17520 ||||||||| ||||| || ||| ||| || || ||||| ||||||||| Sbjct 11331 ACTTCTTCGACCGTCCAGAATGAAGCTTTTGCTTTCTTGTACATTAACCAAATATC 11386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517156256914440