Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq503 93.3 4e-14 seq2645 82.4 8e-11 >seq503 Length=134583 Score = 93.3 bits (102), Expect = 4e-14 Identities = 195/288 (68%), Gaps = 2/288 (1%) Strand=Plus/Plus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 || || || || |||| || ||||||||||| ||||| |||||||| |||| | |||| Sbjct 11100 ATGTAGGTGTCGATCAACAAGCTGTACATTTCCGAGTGAATGTTCTCCATGGTGAACTGA 11159 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTC-CACGTAAAATCGTTCCGCCAG 16590 || || || |||||||| ||||| || || || || |||||| || | || Sbjct 11160 AACCCGTAAAAGCATCGCGCCTCAAGTACCTGAACCTCTTGAGTAAAA-CGCTGAAGGAG 11218 Query 16591 GTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATA 16650 ||| || || || || ||||| || || || || || ||||| | ||| ||||| | Sbjct 11219 GTTTTCGTTTACAATGCCGTCGCTGGCCGCGAAGAAAGCCAAAACGTGAGAGATGAATTT 11278 Query 16651 TTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTC 16710 | | || || | ||| | ||| | | || || || || | ||| |||||||| Sbjct 11279 TCTCTCCTCCCGCTTGAGAGATTCCCAGTGTGGTAGGTCCTTCGAGAGATCAACTTCTTC 11338 Query 16711 TGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATC 16758 |||||| || ||| ||| || || |||||| ||||||||| Sbjct 11339 GACCGTCCAGAATGAAGCTTTTGCTTTCTTGTACATTAACCAAATATC 11386 >seq2645 Length=46952 Score = 82.4 bits (90), Expect = 8e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 16516 CTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTA 16575 ||| || || || || || |||||||| |||| ||||| | || || || || Sbjct 12863 CTCCATAGCCATTTGGAAGCCATAGAAACATCTTGCCTCAGGAATCTGAACCTCTTGACC 12804 Query 16576 AAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATAT 16635 ||| | ||| | ||||||||||| || ||||| || ||||| ||||| || |||| || Sbjct 12803 AAACCTCTCCACTAGGTTCTCATTGACAATACCATCGCTTGCTGCAAAGAAGGCCAGGAT 12744 Query 16636 GTGCTTAATGAAATA 16650 |||||| |||||||| Sbjct 12743 GTGCTTGATGAAATA 12729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511029669339560