Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq8469 120 4e-22 seq937 96.9 4e-15 seq47842 87.8 2e-12 seq6406 87.8 2e-12 >seq8469 Length=53876 Score = 120 bits (132), Expect = 4e-22 Identities = 203/294 (69%), Gaps = 0/294 (0%) Strand=Plus/Plus Query 24405 TATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 24464 || || |||||||| | || ||||| || || |||||||| || ||||| || || || Sbjct 18798 TAGGTGTCAATCAACAAGCTGTACATCTCGGAGTGAATGTTCTCGATGGCGATCTGGAAC 18857 Query 24465 CCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTT 24524 |||||||| || | ||||||| | ||| || || | || || || | | || Sbjct 18858 CCGTAGAAGCACCGCGCCTCGGGCACCTGAACCTCCTGGCTGAACCGCTCCACGAGGTTC 18917 Query 24525 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 24584 || ||||| || ||||| ||||| || || |||||||| || || || || | | Sbjct 18918 TCGTTCACGATGCCGTCGCTGGCGGCGAAGAACGCCAAGACGTGGGAGATGAAGTGCCTC 18977 Query 24585 TCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACT 24644 ||||| || | || | ||| || || || || || | || || || || || Sbjct 18978 TCGTCCGGCTTGAGGGACTCCCAGTCTGGGAGGTCCTTGGAGAGGTCGACCTCCTCGACC 19037 Query 24645 GTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGA 24698 ||||| || || ||||||||||| || ||||| | ||||||||| ||| ||||| Sbjct 19038 GTCCAGAACGACGCCTCTGCCTTCTTGTACATGTCCCAGATGTCCTGAAATTGA 19091 >seq937 Length=97168 Score = 96.9 bits (106), Expect = 4e-15 Identities = 194/288 (67%), Gaps = 0/288 (0%) Strand=Plus/Plus Query 24405 TATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 24464 || || || ||||| | || ||||| || || |||||||| || ||||| || || || Sbjct 94004 TAGGTGTCGATCAACAAGCTGTACATCTCTGAGTGAATGTTCTCGATGGCGATCTGGAAC 94063 Query 24465 CCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTT 24524 |||||||| || | ||||| | | ||| || || | || || || | | || Sbjct 94064 CCGTAGAAGCACCGCGCCTCCGGCACCTGAACCTCCTGGCTGAACCGCTCCACGAGGTTC 94123 Query 24525 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 24584 || ||||| || ||||| ||||| || || || ||||| || || || || | | Sbjct 94124 TCGTTCACGATGCCGTCGCTGGCGGCGAAGAAGGCCAAGACGTGGGAGATGAAGTGCCTC 94183 Query 24585 TCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACT 24644 || || || | || | ||| || || || || || | || || || || || Sbjct 94184 TCATCCGGCTTGAGGGACTCCCAGTCTGGGAGGTCCTTGGAGAGGTCGACCTCCTCGACC 94243 Query 24645 GTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 24692 ||||| || || ||||||||||| || ||||| | ||||||||| ||| Sbjct 94244 GTCCAGAACGACGCCTCTGCCTTCTTGTACATGTCCCAGATGTCCTGA 94291 >seq47842 Length=15337 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 53756 ATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTT 53815 || ||||||||||| || ||||| ||||||||||| || | || || || |||||||| Sbjct 11510 ATAATCTCAGTGCACAGGTTACTGCACTTGATGGTGCCAAGGTTCTGCTGGTTACTCTTA 11451 Query 53816 TTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATA 53875 |||| || ||||| || || || ||| | || ||||| || || |||||| | | Sbjct 11450 CTGTTGCAGGCATCTTTGTACAGCATGTACGGGGTACCGGTCTCTGTCTGGGCCTGCACG 11391 Query 53876 ATCGCTTTCCAGACGACAC-GAGCCTTTAT 53904 || || | ||||| || || ||||||| || Sbjct 11390 ATGGCCTGCCAGA-GATACTGAGCCTTGAT 11362 >seq6406 Length=55272 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 53756 ATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTT 53815 || ||||| ||||| || ||||||||||||||||| || | || || || |||||||| Sbjct 30223 ATAATCTCGGTGCACAGGTTACTACACTTGATGGTGCCAAGGTTCTGCTGGTTACTCTTA 30164 Query 53816 TTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATA 53875 |||| || ||||| || || || ||| | || ||||| || || |||||| | | Sbjct 30163 CTGTTGCAGGCATCTTTGTACAGCATGTACGGGGTACCGGTCTCTGTCTGGGCCTGCACG 30104 Query 53876 ATCGCTTTCCAGACGACAC-GAGCCTTTAT 53904 || || | ||||| || || ||||||| || Sbjct 30103 ATGGCCTGCCAGA-GATACTGAGCCTTGAT 30075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593274950661840