Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq4762 111 1e-19 seq9089 105 4e-18 seq3742 104 2e-17 seq4379 100 2e-16 >seq4762 Length=92317 Score = 111 bits (122), Expect = 1e-19 Identities = 107/135 (79%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| |||||||||||||||||||| | || || ||||| |||||||||||||| Sbjct 80963 CCGCCCCGCAGCCTCAGCACCAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGAG 80904 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || ||| |||| |||| ||||||||| ||||| || |||| ||||||||| | |||| Sbjct 80903 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGCGGG 80844 Query 34282 CACGCTCTCCTTGTC 34296 | || |||||||| Sbjct 80843 -ATGCCTTCCTTGTC 80830 >seq9089 Length=72386 Score = 105 bits (116), Expect = 4e-18 Identities = 106/135 (79%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| |||||||||||||||||||| | || || ||||| |||||||||||||| Sbjct 52168 CCGCCCCGCAGCCTCAGCACCAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGAG 52109 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || ||| |||| |||| ||||||||| || || || |||| ||||||||| | |||| Sbjct 52108 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGCGGG 52049 Query 34282 CACGCTCTCCTTGTC 34296 | || |||||||| Sbjct 52048 -ATGCCTTCCTTGTC 52035 >seq3742 Length=77992 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || |||||||| | || |||||||| ||||||||||| ||| Sbjct 33474 CCTCCACGCAGACGGAGAACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 33415 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| |||||| || ||||| || || ||||||||||| || Sbjct 33414 AGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGG 33355 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||| ||||| ||||| ||| | || | || | || | | ||||| Sbjct 33354 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACC 33295 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||||||||| || | || || || ||||||||||| Sbjct 33294 TCAAGGGTGATGGTTTTGCCTGTCAAGGTCTTGACGAAGATCTGCAT 33248 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || |||| ||| | || |||||||| ||||||||||| ||| Sbjct 33018 CCACCACGCAGACGGAGAACCAAGTGGAGTGTGGACTCTTTCTGGATGTTGTAGTCAGAC 32959 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| |||||| || || || || || ||||||||||| || Sbjct 32958 AGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGTGGG 32899 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||| ||||| ||| || ||||| | || | || | || | | ||||| Sbjct 32898 ATGCCCTCTTTGTCTTGGATC-TTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCGAC 32840 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | |||||||| ||||| || || || || || |||||||||||| Sbjct 32839 CTCGAGAGTGATGGTCTTGCCTGTCAGGGTCTTGACGAAGATCTGCATC 32791 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || |||| ||| | || |||||||| ||||||||||| ||| Sbjct 33246 CCACCACGCAGACGGAGAACCAAGTGGAGTGTGGACTCTTTCTGGATGTTGTAGTCAGAC 33187 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| |||||| || ||||| || || ||||||||||| || Sbjct 33186 AGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGG 33127 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||| ||||| || ||| ||||| | || | || | || | | ||||| Sbjct 33126 ATGCCCTCTTTGTCTTGGAT-TTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCGAC 33068 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| || || || || || || || ||||||||||| Sbjct 33067 CTCAAGAGTGATGGTCTTACCTGTCAGGGTCTTGACGAAGATCTGCAT 33020 >seq4379 Length=69586 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || |||| ||| | || |||||||| ||||||||||| ||| Sbjct 40075 CCACCACGCAGACGGAGAACCAAGTGGAGTGTGGACTCTTTCTGGATGTTGTAGTCAGAC 40134 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| |||||| || ||||| || || ||||||||||| || Sbjct 40135 AGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGG 40194 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||| ||||| ||| || ||||| | || | || | || | | ||||| Sbjct 40195 ATGCCCTCTTTGTCTTGGATC-TTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCGAC 40253 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | |||||||| ||||| || || || || || |||||||||||| Sbjct 40254 CTCGAGAGTGATGGTCTTGCCTGTCAGGGTCTTGACGAAGATCTGCATC 40302 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || |||| ||| | || |||||||| ||||||||||| ||| Sbjct 49698 CCACCACGCAGACGGAGAACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 49757 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| |||||| || ||||| || || ||||||||||| || Sbjct 49758 AGGGTGCGGCCATCTTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGGTGGG 49817 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||| ||||| ||| || ||||| | || | || | || | | ||||| Sbjct 49818 ATGCCCTCTTTGTCTTGGATC-TTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCGAC 49876 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | |||||||| ||||| || || || || || |||||||||||| Sbjct 49877 CTCAAGAGTGATGGTCTTGCCTGTCAGGGTCTTGACGAAGATCTGCATC 49925 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || |||| ||| | || |||||||| ||||||||||| ||| Sbjct 39063 CCTCCACGCAGACGGAGAACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 39122 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| |||||| || ||||| || || ||||||||||| || Sbjct 39123 AGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGG 39182 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||| ||||| ||||| ||| | || | || | || | | ||||| Sbjct 39183 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACC 39242 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||| || || || || || ||||||||||| Sbjct 39243 TCAAGAGTGATGGTCTTGCCTGTCAGGGTCTTGACGAAGATCTGCAT 39289 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 |||||||| ||||||||||| ||||| ||| | || |||| |||||| || ||||| Sbjct 39655 TCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCGAAG 39714 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATC 34317 || || ||||||||||| || | || ||| ||||| ||| || ||||| | || Sbjct 39715 ATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGATC-TTGGCTTTGACATT 39773 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | || | | ||||| || | || ||||| || || || || || || || Sbjct 39774 CTCGATGGTGTCACTTGGCTCGACCTCAAGAGTAATGGTCTTACCCGTCAGGGTCTTGAC 39833 Query 34378 AAAGATCTGCAT 34389 ||||||||||| Sbjct 39834 GAAGATCTGCAT 39845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322835033048480