Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq47842 89.7 1e-12 seq6406 89.7 1e-12 >seq47842 Length=15337 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 249277 TTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAG 249336 || ||||| || |||| ||||||||||| || || || |||||||||| || ||| Sbjct 10368 TTTGCCATCTACCTGGAGCCCTGGCACGCCGACATCTTTGATTTCCTGGACTGCAAGAAG 10427 Query 249337 AACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGAC 249396 ||| ||||||| ||| | | || || |||||||||||||| || ||| | | ||| Sbjct 10428 AACCACGGCAAGGAGGAGCAGCGGGCCCGCGACCTCTTCTACGGACTCTGGATACCAGAC 10487 Query 249397 TTGTTCATGCGCCGCGT 249413 |||||||| | ||||| Sbjct 10488 CTGTTCATGAGGCGCGT 10504 >seq6406 Length=55272 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 249277 TTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAG 249336 || ||||| || |||| ||||||||||| || || || |||||||||| || ||| Sbjct 29085 TTTGCCATCTACCTGGAGCCCTGGCACGCCGACATCTTTGATTTCCTGGACTGCAAGAAG 29144 Query 249337 AACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGAC 249396 ||| ||||||| ||| | | || || |||||||||||||| || ||| | | ||| Sbjct 29145 AACCACGGCAAGGAGGAGCAGCGGGCCCGCGACCTCTTCTACGGACTCTGGATACCAGAC 29204 Query 249397 TTGTTCATGCGCCGCGT 249413 |||||||| | ||||| Sbjct 29205 CTGTTCATGAGGCGCGT 29221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1072938424433344