Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq503 123 2e-23 seq4379 95.1 1e-14 seq6406 89.7 5e-13 seq3742 89.7 5e-13 seq47842 84.2 2e-11 seq4762 82.4 7e-11 >seq503 Length=134583 Score = 123 bits (136), Expect = 2e-23 Identities = 185/263 (70%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 || |||||| |||||||| || ||| |||| || || ||||| ||||||||||| || Sbjct 11386 GATATTTGGTTAATGTACAAGAAAGCAAAAGCTTCATTCTGGACGGTCGAAGAAGTTGAT 11327 Query 57627 CTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || || ||||| || | ||||| || ||||| |||||||| || || Sbjct 11326 CTCTCGAAGGACCTACCACACTGGGAATCTCTCAAGCGGGAGGAGAGAAAATTCATCTCT 11267 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||||| ||||| || ||||| || ||| || ||||| ||||| || | | | | Sbjct 11266 CACGTTTTGGCTTTCTTCGCGGCCAGCGACGGCATTGTAAACGAAAACCTCCTTCAGCGT 11207 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 ||| | ||||| || || || |||||| ||||||||||||| ||||| | |||| Sbjct 11206 TTTACTCAAGAGGTTCAGGTACTTGAGGCGCGATGCTTTTACGGGTTTCAGTTCACCATG 11147 Query 57807 GAAAACGTGCATTCAGAAATGTA 57829 || ||| | || || |||||||| Sbjct 11146 GAGAACATTCACTCGGAAATGTA 11124 >seq4379 Length=69586 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| ||||| ||||||||||| || ||||| |||| || || || Sbjct 40304 AAGATGCAGATCTTCGTCAAGACCCTGACAGGCAAGACCATCACTCTCGAGGTCGAGCCC 40245 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 |||| |||| | |||||| | || ||||| || ||| | || || ||| Sbjct 40244 AGTGACACCATCGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGCATCCCACCAGAC 40185 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||||| || ||||| || || ||| ||||||| || || || || Sbjct 40184 CAGCAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTAC 40125 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || ||||| || || || || |||| || | ||| | || |||| Sbjct 40124 AACATCCAGAAAGAGTCCACACTCCACTTGGTTCTCCGTCTGCGTGGTGGTA 40073 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| ||||| ||||||||||| || ||||| | || || || || Sbjct 49927 AAGATGCAGATCTTCGTCAAGACCCTGACAGGCAAGACCATCACTCTTGAGGTCGAGCCC 49868 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 |||| |||| | |||||| | || ||||| || ||| | || || ||| Sbjct 49867 AGTGACACCATCGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGCATCCCACCAGAC 49808 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||||| || |||||||| || ||| ||||||| || || || || Sbjct 49807 CAGCAGCGTCTGATCTTCGCTGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTAC 49748 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || ||||| || || || || |||| || | ||| | || |||| Sbjct 49747 AACATCCAGAAAGAGTCCACCCTCCACTTGGTTCTCCGTCTGCGTGGTGGTA 49696 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||||||||| || ||||| | || || || || Sbjct 39289 ATGCAGATCTTCGTCAAGACCCTGACAGGCAAGACCATCACTCTTGAGGTCGAGCCCAGT 39230 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||| || ||| | || || |||||| Sbjct 39229 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCAG 39170 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||| || ||||| || || ||| ||||||| Sbjct 39169 CAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAAGA 39135 >seq6406 Length=55272 Score = 89.7 bits (98), Expect = 5e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 23494 CTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCAC 23553 ||| || || |||||||| ||||||||||| ||||||||||| |||||||||||||||| Sbjct 28690 CTTGTTTCCTCCCTGATCTACGTAACGGGCGGTGTTGTTGTAAACTCTTAGCATCGGCAG 28631 Query 23554 GAGACCGTTGGACGCGCCG 23572 ||| || || ||| |||| Sbjct 28630 GAGCCCATTTGACTGGCCG 28612 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 23065 GTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTT 23124 |||||| | ||| ||||| || || || |||||||| || ||||| | || |||||| Sbjct 30230 GTACTCGATAATCTCGGTGCACAGGTTACTACACTTGATGGTGCCAAGGTTCTGCTGGTT 30171 Query 23125 GCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGA 23184 || || | ||||| | ||| ||||| ||||||||||| || || ||||| ||| | Sbjct 30170 ACTCTTACTGTTGCAGGCATCTTTGTACAGCATGTACGGGGTACCGGTCTCTGTCTGGGC 30111 Query 23185 CTCGATGATCGCTCGCCACATAGTCTGAGC 23214 || | ||| || |||| | | |||||| Sbjct 30110 CTGCACGATGGCCTGCCAGAGATACTGAGC 30081 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/214 (69%), Gaps = 3/214 (1%) Strand=Plus/Minus Query 22460 ACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAA 22519 || || || || || |||| || | ||| ||| |||||| ||| |||| || | Sbjct 33213 ACCTGGAATTCACCAGACAGCACCCTGCGAGTGTAGATGTTGCTGGTGTACGGCTCAATG 33154 Query 22520 GATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGC 22579 || || ||||| ||||| |||||||| || || ||||| ||||| || |||| ||| || Sbjct 33153 GACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCGGTAGGCATGGGGGCCAGCAGGAGA 33094 Query 22580 GAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCG 22639 ||| || | |||| ||| | ||| | ||| || | |||||| ||| || Sbjct 33093 CTGTTCCTGAGCCCGTACTTGGCAATGTCCGCCTTCAGGGCGGCCCAGTCTTGCAGGTCC 33034 Query 22640 GACGGCGTCACATTGTCCCACATATCGTATTGCA 22673 | ||| || || || |||||||||||| |||| Sbjct 33033 GTCGGGGTGACGTT---CCACATATCGTACTGCA 33003 >seq3742 Length=77992 Score = 89.7 bits (98), Expect = 5e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| ||||| ||||||||||| || ||||| |||| || || || Sbjct 32789 AAGATGCAGATCTTCGTCAAGACCCTGACAGGCAAGACCATCACTCTCGAGGTCGAGCCC 32848 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 |||| |||| | |||||| | || ||||| || ||| | || || ||| Sbjct 32849 AGTGACACCATCGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGCATCCCACCAGAC 32908 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||||| || || || || || ||| ||||||| || || || || Sbjct 32909 CAGCAGCGTCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTAC 32968 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || ||||| || || || || |||| || | ||| | || |||| Sbjct 32969 AACATCCAGAAAGAGTCCACACTCCACTTGGTTCTCCGTCTGCGTGGTGGTA 33020 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||||||| || || ||||| | || || || || Sbjct 33020 ATGCAGATCTTCGTCAAGACCCTGACAGGTAAGACCATCACTCTTGAGGTCGAGCCCAGT 33079 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | |||||| | ||| ||||| || ||| | || || |||||| Sbjct 33080 GACACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAAGAGGGCATCCCACCAGACCAG 33139 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||| || || ||| ||||||| || || || || ||| Sbjct 33140 CAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 33199 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || ||||| || || || || |||| || | ||| | || |||| Sbjct 33200 ATCCAGAAAGAGTCCACACTCCACTTGGTTCTCCGTCTGCGTGGTGGTA 33248 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||||||||||| |||||| | || || || || Sbjct 33248 ATGCAGATCTTCGTCAAGACCTTGACAGGCAAAACCATCACCCTTGAGGTCGAGCCCAGT 33307 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||| || ||| | || || |||||| Sbjct 33308 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCAG 33367 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||| || || ||| ||||||| || || || || ||| Sbjct 33368 CAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 33427 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || ||||| || || || || ||||| || Sbjct 33428 ATCCAGAAAGAGTCCACCCTCCACCTGGTTCT 33459 >seq47842 Length=15337 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 23494 CTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCAC 23553 ||| || || |||||||| ||||| ||||| ||||||||||| |||||||||||||||| Sbjct 9591 CTTGTTTCCTCCCTGATCTACGTAGCGGGCGGTGTTGTTGTAAACTCTTAGCATCGGCAG 9532 Query 23554 GAGACCGTTGGACGCGCCG 23572 ||| || || ||| |||| Sbjct 9531 GAGCCCATTTGACTGGCCG 9513 >seq4762 Length=92317 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344 ||||||||||||| | ||||| ||||||||| | || || ||||| ||||| ||| |||| Sbjct 80829 GGACAAGGAAGGCATCCCGCCAGACCAGCAGAGGCTGATCTTCGCCGGCAAGCAGCTGGA 80888 Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || | ||| || ||||| || || || || || || || ||||| || Sbjct 80889 GGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACGCTCCACCTGGTGCT 80948 Query 31405 TAGACTGAGGGGCGG 31419 || ||| ||||||| Sbjct 80949 GAGGCTGCGGGGCGG 80963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445431055509360