Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq503 125 9e-24 seq8469 114 2e-20 seq937 100 4e-16 seq2645 82.4 1e-10 >seq503 Length=134583 Score = 125 bits (138), Expect = 9e-24 Identities = 160/220 (73%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| || | ||||| | || ||||||||||| | || ||||| | ||||| |||| Sbjct 10719 CCTCATCGCGGCTAATCAGCTCATTAGAAAACGTCAAGCCAGGCATCAACCCACGTTTTT 10778 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | |||||||| ||||| ||||| ||||| || ||||| || || || || || ||||||| Sbjct 10779 TCAGCCAAAAGATGGAGGCGAAAGATCCCGAGAAGAAAATCCCCTCCACCGCGGCAAAGG 10838 Query 33724 CAATAAGTCTCTCTCCATAACCGGCGCTGTC---ATGTATCCACTTTTGAGCCCAATCGG 33780 | | | |||||| || || || | || || ||||| ||| | ||||| || | Sbjct 10839 CCACGACTCTCTCACCGTAGGTGGACGTTTCCGAATTAATCCAGTTTAGCGCCCAGTCAG 10898 Query 33781 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 33820 |||| | ||| || ||||| | ||| || ||||| ||||| Sbjct 10899 CCTTTTGTTTGACGCAAGGTAGCGTCTCAATGGCGTTAAA 10938 >seq8469 Length=53876 Score = 114 bits (126), Expect = 2e-20 Identities = 201/293 (69%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 33852 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 33911 || || || ||||| | || ||||| || || |||||||| || ||||| ||||| || Sbjct 18798 TAGGTGTCAATCAACAAGCTGTACATCTCGGAGTGAATGTTCTCGATGGCGATCTGGAAC 18857 Query 33912 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTT 33971 |||||||| || | ||||||| | ||| || || | || || || | | || Sbjct 18858 CCGTAGAAGCACCGCGCCTCGGGCACCTGAACCTCCTGGCTGAACCGCTCCACGAGGTTC 18917 Query 33972 TCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 34031 || ||||| || || || ||||| || || |||||||| || || || || | | Sbjct 18918 TCGTTCACGATGCCGTCGCTGGCGGCGAAGAACGCCAAGACGTGGGAGATGAAGTGCCTC 18977 Query 34032 TCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACT 34091 ||||| || | || | ||| || || || || || | || || || || || Sbjct 18978 TCGTCCGGCTTGAGGGACTCCCAGTCTGGGAGGTCCTTGGAGAGGTCGACCTCCTCGACC 19037 Query 34092 GTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTG 34144 ||||| || || ||||||||||| || ||||| | ||||||||| ||| |||| Sbjct 19038 GTCCAGAACGACGCCTCTGCCTTCTTGTACATGTCCCAGATGTCCTGAAATTG 19090 >seq937 Length=97168 Score = 100 bits (110), Expect = 4e-16 Identities = 195/288 (68%), Gaps = 0/288 (0%) Strand=Plus/Plus Query 33852 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 33911 || || |||||||| | || ||||| || || |||||||| || ||||| ||||| || Sbjct 94004 TAGGTGTCGATCAACAAGCTGTACATCTCTGAGTGAATGTTCTCGATGGCGATCTGGAAC 94063 Query 33912 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTT 33971 |||||||| || | ||||| | | ||| || || | || || || | | || Sbjct 94064 CCGTAGAAGCACCGCGCCTCCGGCACCTGAACCTCCTGGCTGAACCGCTCCACGAGGTTC 94123 Query 33972 TCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 34031 || ||||| || || || ||||| || || || ||||| || || || || | | Sbjct 94124 TCGTTCACGATGCCGTCGCTGGCGGCGAAGAAGGCCAAGACGTGGGAGATGAAGTGCCTC 94183 Query 34032 TCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACT 34091 || || || | || | ||| || || || || || | || || || || || Sbjct 94184 TCATCCGGCTTGAGGGACTCCCAGTCTGGGAGGTCCTTGGAGAGGTCGACCTCCTCGACC 94243 Query 34092 GTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 34139 ||||| || || ||||||||||| || ||||| | ||||||||| ||| Sbjct 94244 GTCCAGAACGACGCCTCTGCCTTCTTGTACATGTCCCAGATGTCCTGA 94291 >seq2645 Length=46952 Score = 82.4 bits (90), Expect = 1e-10 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCA 33725 ||||||||||| | || |||||||| || |||||||| ||||| |||||||| || ||| Sbjct 14798 AGCCAAAATATAGCTGCAAATGATCCCGAGAAGAAGATGCCTTCCACTGCAGCGAATGCA 14739 Query 33726 ATAAGTCTCTCTCCA 33740 | |||||||||||| Sbjct 14738 ACGAGTCTCTCTCCA 14724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629343796092240