Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq503 102 8e-17 seq2645 93.3 4e-14 >seq503 Length=134583 Score = 102 bits (112), Expect = 8e-17 Identities = 153/215 (71%), Gaps = 7/215 (3%) Strand=Plus/Plus Query 11663 CTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAAT 11722 || || || ||||||||||| || || || |||||||| || |||||||| | |||||| Sbjct 10730 CTAATCAGCTCATTAGAAAACGTCAAGCCAGGCATCAACCCACGTTTTTTCAGCCAAAAG 10789 Query 11723 ATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTT 11782 || | || || || || || ||||| || |||||||| || ||||| || || ||||| Sbjct 10790 ATGGAGGCGAAAGATCCCGAGAAGAAAATCCCCTCCACCGCGGCAAAGGCCACGACTCTC 10849 Query 11783 TCTCCATA----TACCTTGTTGCTAGAT-ATCCATTTTCTGGCCCAATCAGCTTTCTTTT 11837 || || || || | || | | | ||||| ||| ||||| ||||| || | || Sbjct 10850 TCACCGTAGGTGGACGT--TTCCGAATTAATCCAGTTTAGCGCCCAGTCAGCCTTTTGTT 10907 Query 11838 TTACGCATTCCATTGTTTCTATAGCGTTAAATAAA 11872 | ||||| | || || || |||||||| ||| Sbjct 10908 TGACGCAAGGTAGCGTCTCAATGGCGTTAAACAAA 10942 >seq2645 Length=46952 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11942 TCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAA 12001 |||||||| ||||| || ||||||||||||| |||||| | | ||| || || | | Sbjct 12862 TCCATAGCCATTTGGAAGCCATAGAAACATCTTGCCTCAGGAATCTGAACCTCTTGACCA 12803 Query 12002 AATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATA 12061 || || ||| ||| |||||||| ||||||||||| || | |||||| || || || || Sbjct 12802 AACCTCTCCACTAGGTTCTCATTGACAATACCATCGCTTGCTGCAAAGAAGGCCAGGATG 12743 Query 12062 TGTTTTATAAAGTA 12075 || || || || || Sbjct 12742 TGCTTGATGAAATA 12729 Score = 86.0 bits (94), Expect = 6e-12 Identities = 100/133 (75%), Gaps = 3/133 (2%) Strand=Plus/Minus Query 11716 CCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTAC 11775 |||||||||||| |||||||| || || ||||| || || ||||| || || ||||| || Sbjct 14796 CCAAAATATAGCTGCAAATGATCCCGAGAAGAAGATGCCTTCCACTGCAGCGAATGCAAC 14737 Query 11776 TACTCTTTCTCC--ATATACCTT-GTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTT 11832 | ||| ||||| || || ||| ||| | |||||| ||||||| |||||||| Sbjct 14736 GAGTCTCTCTCCAAATGTAGCTTCCTTGGCATGAATCCATCGAATGGCCCAGTCAGCTTT 14677 Query 11833 CTTTTTTACGCAT 11845 ||| || | |||| Sbjct 14676 CTTCTTGATGCAT 14664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468172334649520