Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq503 129 8e-25 seq8469 118 2e-21 seq937 105 1e-17 >seq503 Length=134583 Score = 129 bits (142), Expect = 8e-25 Identities = 161/220 (73%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| || | ||||| || || || |||||||| | || ||||| | ||||| |||| Sbjct 10719 CCTCATCGCGGCTAATCAGCTCATTAGAAAACGTCAAGCCAGGCATCAACCCACGTTTTT 10778 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | |||||||| ||||| || || || || || ||||| || || || || |||||||||| Sbjct 10779 TCAGCCAAAAGATGGAGGCGAAAGATCCCGAGAAGAAAATCCCCTCCACCGCGGCAAAGG 10838 Query 50102 CAACAAGTCTCTCTCCATAACTGGCGCTGTC---ATGTATCCACTTTTGAGCCCAATCGG 50158 | || | |||||| || || ||| | || || ||||| ||| | ||||| || | Sbjct 10839 CCACGACTCTCTCACCGTAGGTGGACGTTTCCGAATTAATCCAGTTTAGCGCCCAGTCAG 10898 Query 50159 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 50198 |||| | ||| || ||||| | ||| || ||||| ||||| Sbjct 10899 CCTTTTGTTTGACGCAAGGTAGCGTCTCAATGGCGTTAAA 10938 Score = 89.7 bits (98), Expect = 7e-13 Identities = 185/273 (68%), Gaps = 2/273 (1%) Strand=Plus/Plus Query 50230 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 50289 || || |||||||| | || ||||||||||| |||||||| || |||| | |||||| Sbjct 11103 TAGGTGTCGATCAACAAGCTGTACATTTCCGAGTGAATGTTCTCCATGGTGAACTGAAAC 11162 Query 50290 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTT 50349 ||||| || |||| ||||| | ||| || ||| | ||| || | | | ||| Sbjct 11163 CCGTAAAAGCATCGCGCCTCAAGTACCTGAACCTCTTGAGTAAAACGCTGAAGGAGGTTT 11222 Query 50350 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTT 50409 || || || || ||||| ||||| || || || ||||| || || || || | | | Sbjct 11223 TCGTTTACAATGCCGTCGCTGGCCGCGAAGAAAGCCAAAACGTGAGAGATGAATTTTCTC 11282 Query 50410 TCGTTGGGTGTTAGTTTATTCCAATCATTG-ATATCTTTAGATATATCTACTTCTTCCAC 50468 || | | | || ||||| | | | | || || || | ||| |||||||| || Sbjct 11283 TCCTCCCGCTTGAG-AGATTCCCAGTGTGGTAGGTCCTTCGAGAGATCAACTTCTTCGAC 11341 Query 50469 TGTCCAAAATGATGCCTCTGCCTTTTTATACAT 50501 ||||| ||||| || | ||| || || ||||| Sbjct 11342 CGTCCAGAATGAAGCTTTTGCTTTCTTGTACAT 11374 >seq8469 Length=53876 Score = 118 bits (130), Expect = 2e-21 Identities = 202/293 (69%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 50230 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 50289 || || || ||||| | || ||||| || || |||||||| || ||||| ||||| || Sbjct 18798 TAGGTGTCAATCAACAAGCTGTACATCTCGGAGTGAATGTTCTCGATGGCGATCTGGAAC 18857 Query 50290 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTT 50349 |||||||| || | ||||||| | ||| || || | || || || | | || Sbjct 18858 CCGTAGAAGCACCGCGCCTCGGGCACCTGAACCTCCTGGCTGAACCGCTCCACGAGGTTC 18917 Query 50350 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTT 50409 || ||||| || ||||| ||||| || || |||||||| || || || || || | Sbjct 18918 TCGTTCACGATGCCGTCGCTGGCGGCGAAGAACGCCAAGACGTGGGAGATGAAGTGCCTC 18977 Query 50410 TCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACT 50469 |||| || | || | ||| || || || || || | || || || || || Sbjct 18978 TCGTCCGGCTTGAGGGACTCCCAGTCTGGGAGGTCCTTGGAGAGGTCGACCTCCTCGACC 19037 Query 50470 GTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTG 50522 ||||| || || ||||||||||| || ||||| | ||||||||| ||| |||| Sbjct 19038 GTCCAGAACGACGCCTCTGCCTTCTTGTACATGTCCCAGATGTCCTGAAATTG 19090 >seq937 Length=97168 Score = 105 bits (116), Expect = 1e-17 Identities = 196/288 (68%), Gaps = 0/288 (0%) Strand=Plus/Plus Query 50230 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 50289 || || |||||||| | || ||||| || || |||||||| || ||||| ||||| || Sbjct 94004 TAGGTGTCGATCAACAAGCTGTACATCTCTGAGTGAATGTTCTCGATGGCGATCTGGAAC 94063 Query 50290 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTT 50349 |||||||| || | ||||| | | ||| || || | || || || | | || Sbjct 94064 CCGTAGAAGCACCGCGCCTCCGGCACCTGAACCTCCTGGCTGAACCGCTCCACGAGGTTC 94123 Query 50350 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTT 50409 || ||||| || ||||| ||||| || || || ||||| || || || || || | Sbjct 94124 TCGTTCACGATGCCGTCGCTGGCGGCGAAGAAGGCCAAGACGTGGGAGATGAAGTGCCTC 94183 Query 50410 TCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACT 50469 || | || | || | ||| || || || || || | || || || || || Sbjct 94184 TCATCCGGCTTGAGGGACTCCCAGTCTGGGAGGTCCTTGGAGAGGTCGACCTCCTCGACC 94243 Query 50470 GTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 50517 ||||| || || ||||||||||| || ||||| | ||||||||| ||| Sbjct 94244 GTCCAGAACGACGCCTCTGCCTTCTTGTACATGTCCCAGATGTCCTGA 94291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717728455360120