Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq47842 87.8 2e-12 seq6406 87.8 2e-12 seq2645 86.0 8e-12 >seq47842 Length=15337 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 71749 ATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTT 71808 ||||| |||||||| || ||||| ||||||||||| || | || || || |||||||| Sbjct 11510 ATAATCTCAGTGCACAGGTTACTGCACTTGATGGTGCCAAGGTTCTGCTGGTTACTCTTA 11451 Query 71809 TTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATA 71868 |||| || ||||| || || || || |||| ||||| || || |||| | | | Sbjct 11450 CTGTTGCAGGCATCTTTGTACAGCATGTACGGGGTACCGGTCTCTGTCTGGGCCTGCACG 11391 Query 71869 ATCGCTTTCCAGA-CGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTA 71927 || || | ||||| ||| ||||||| || | || |||| || ||| |||||||| Sbjct 11390 ATGGCCTGCCAGAGATACT-GAGCCTTGATCTTCTTGCGGTATTTCCCTTCGCTTTCGTA 11332 >seq6406 Length=55272 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 71749 ATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTT 71808 ||||| || ||||| || ||||||||||||||||| || | || || || |||||||| Sbjct 30223 ATAATCTCGGTGCACAGGTTACTACACTTGATGGTGCCAAGGTTCTGCTGGTTACTCTTA 30164 Query 71809 TTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATA 71868 |||| || ||||| || || || || |||| ||||| || || |||| | | | Sbjct 30163 CTGTTGCAGGCATCTTTGTACAGCATGTACGGGGTACCGGTCTCTGTCTGGGCCTGCACG 30104 Query 71869 ATCGCTTTCCAGA-CGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTA 71927 || || | ||||| ||| ||||||| || | || |||| || ||| |||||||| Sbjct 30103 ATGGCCTGCCAGAGATACT-GAGCCTTGATCTTCTTGCGGTATTTCCCTTCGCTTTCGTA 30045 >seq2645 Length=46952 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCA 42208 ||||||||||||| ||||||||||| || |||||||| ||||| ||||| || || ||| Sbjct 14798 AGCCAAAATATAGCTGCAAATGATCCCGAGAAGAAGATGCCTTCCACTGCAGCGAATGCA 14739 Query 42209 ATAAGTCTCTCTCCA 42223 | |||||||||||| Sbjct 14738 ACGAGTCTCTCTCCA 14724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670634310369080