Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq937 136 6e-27 seq8469 129 9e-25 seq47842 96.9 5e-15 seq6406 93.3 6e-14 seq1322 89.7 8e-13 seq13764 84.2 3e-11 >seq937 Length=97168 Score = 136 bits (150), Expect = 6e-27 Identities = 193/271 (71%), Gaps = 3/271 (1%) Strand=Plus/Minus Query 125012 TCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGT 125071 ||| ||||| ||||| |||||||| ||||| |||| || || ||||||||||| ||||| Sbjct 94291 TCAGGACATCTGGGACATGTACAAGAAGGCAGAGGCGTCGTTCTGGACGGTCGAGGAGGT 94232 Query 125072 CGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTT 125131 ||| || ||||||||||| || |||||| | | | | || |||| | | || Sbjct 94231 CGACCTCTCCAAGGACCTCCCAGACTGGGAGTCCCTCAAGCCGGA---TGAGAGGCACTT 94175 Query 125132 TATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTT 125191 || || ||| | ||||||||||| |||| | ||| || ||||| ||||| || || | Sbjct 94174 CATCTCCCACGTCTTGGCCTTCTTCGCCGCCAGCGACGGCATCGTGAACGAGAACCTCGT 94115 Query 125192 GACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAAT 125251 | || ||| || ||| | | || |||| | |||||| ||||| ||||| || Sbjct 94114 GGAGCGGTTCAGCCAGGAGGTTCAGGTGCCGGAGGCGCGGTGCTTCTACGGGTTCCAGAT 94055 Query 125252 CATGATTGAGAACGTGCACTCGGAAATGTAC 125282 | || |||||| | ||||| || |||||| Sbjct 94054 CGCCATCGAGAACATTCACTCAGAGATGTAC 94024 >seq8469 Length=53876 Score = 129 bits (142), Expect = 9e-25 Identities = 215/311 (69%), Gaps = 11/311 (4%) Strand=Plus/Minus Query 125012 TCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGT 125071 ||| ||||| ||||| |||||||| ||||| |||| || || ||||||||||| ||||| Sbjct 19085 TCAGGACATCTGGGACATGTACAAGAAGGCAGAGGCGTCGTTCTGGACGGTCGAGGAGGT 19026 Query 125072 CGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAG-- 125129 ||| || ||||||||||| || |||||| | || || | | |||||| Sbjct 19025 CGACCTCTCCAAGGACCTCCCAGACTGGGAG-------TCCCTCAAGCCGGACGAGAGGC 18973 Query 125130 --TTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATC 125187 || || || ||| | ||||| ||||| |||| | ||| || ||||| ||||| || | Sbjct 18972 ACTTCATCTCCCACGTCTTGGCGTTCTTCGCCGCCAGCGACGGCATCGTGAACGAGAACC 18913 Query 125188 TGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCC 125247 | || || ||| || ||| | | || |||| | |||||| ||||| |||| Sbjct 18912 TCGTGGAGCGGTTCAGCCAGGAGGTTCAGGTGCCCGAGGCGCGGTGCTTCTACGGGTTCC 18853 Query 125248 AAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTC 125307 | ||| || |||||| | ||||| || |||||| ||||||||| ||||| Sbjct 18852 AGATCGCCATCGAGAACATTCACTCCGAGATGTACAGCTTGTTGATTGACACCTACATCA 18793 Query 125308 GCGATCCGCAA 125318 | || ||| || Sbjct 18792 GAGACCCGAAA 18782 >seq47842 Length=15337 Score = 96.9 bits (106), Expect = 5e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 97179 CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAG 97238 || ||| ||||||||||| ||| ||| |||||| || || |||||||| || ||||| Sbjct 11377 CTCTGGCAGGCCATCGTGCAGGCCCAGACAGAGACCGGTACCCCGTACATGCTGTACAAA 11436 Query 97239 GATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTG 97298 ||| || || | || || ||||| | || | |||||||||||| || || ||| Sbjct 11437 GATGCCTGCAACAGTAAGAGTAACCAGCAGAACCTTGGCACCATCAAGTGCAGTAACCTG 11496 Query 97299 TGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334 ||||| || ||| | |||||| || ||| |||||| Sbjct 11497 TGCACTGAGATTATCGAGTACTCCAGTCCAGACGAG 11532 Score = 91.5 bits (100), Expect = 2e-13 Identities = 152/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 96906 GCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAA-AA 96964 ||| ||||| |||| || |||||||| ||| | ||||| || | || ||| || || Sbjct 10371 GCCATCTACCTGGAGCCCTGGCACGCCGACATCTTTGATTTCCTGGAC-TGCAAGAAGAA 10429 Query 96965 CTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTT 97024 | ||| || ||| || ||| | ||| | || || | ||||||| | ||||| | Sbjct 10430 CCACGGCAAGGAGGAGCAGCGGGCCCGCGACCTCTTCTACGGACTCTGGATACCAGACCT 10489 Query 97025 GTTCATGAAGCGCGTCAACGACGGTGGCTA--CTGGAGCCTAATGTGCCCCGACTCGTCA 97082 |||||||| |||||| | | || | | |||| |||| ||||||||| || || Sbjct 10490 GTTCATGAGGCGCGTGGAGG--GGAACCAAGACTGGTGCCTGATGTGCCCCAACGAGTGC 10547 Query 97083 CCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGA 97117 || || |||| ||||||||||| ||||||||||| Sbjct 10548 CCAGGCTTGTCGGATTGCTGGGGTGAAGAGTTTGA 10582 >seq6406 Length=55272 Score = 93.3 bits (102), Expect = 6e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 97179 CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAG 97238 || ||| ||||||||||| ||| ||| |||||| || || |||||||| || ||||| Sbjct 30090 CTCTGGCAGGCCATCGTGCAGGCCCAGACAGAGACCGGTACCCCGTACATGCTGTACAAA 30149 Query 97239 GATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTG 97298 ||| || || | || || ||||| | || | |||||||||||| | || ||| Sbjct 30150 GATGCCTGCAACAGTAAGAGTAACCAGCAGAACCTTGGCACCATCAAGTGTAGTAACCTG 30209 Query 97299 TGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334 ||||| || ||| | |||||| || ||||||||| Sbjct 30210 TGCACCGAGATTATCGAGTACTCCAGCCCGGACGAG 30245 Score = 91.5 bits (100), Expect = 2e-13 Identities = 152/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 96906 GCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAA-AA 96964 ||| ||||| |||| || |||||||| ||| | ||||| || | || ||| || || Sbjct 29088 GCCATCTACCTGGAGCCCTGGCACGCCGACATCTTTGATTTCCTGGAC-TGCAAGAAGAA 29146 Query 96965 CTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTT 97024 | ||| || ||| || ||| | ||| | || || | ||||||| | ||||| | Sbjct 29147 CCACGGCAAGGAGGAGCAGCGGGCCCGCGACCTCTTCTACGGACTCTGGATACCAGACCT 29206 Query 97025 GTTCATGAAGCGCGTCAACGACGGTGGCTA--CTGGAGCCTAATGTGCCCCGACTCGTCA 97082 |||||||| |||||| | | || | | |||| |||| ||||||||| || || Sbjct 29207 GTTCATGAGGCGCGTGGAGG--GGAACCAAGACTGGTGCCTGATGTGCCCCAACGAGTGC 29264 Query 97083 CCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGA 97117 || || |||| ||||||||||| ||||||||||| Sbjct 29265 CCGGGCTTGTCGGATTGCTGGGGTGAAGAGTTTGA 29299 >seq1322 Length=160377 Score = 89.7 bits (98), Expect = 8e-13 Identities = 101/133 (76%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 70339 GGGCCTCGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCA 70398 ||| || || || || || |||||||||||||| || | ||||| |||||||||| || Sbjct 133252 GGGTCTGGGCGTTCCATTCAACATTGCAAGCTACTCCTTATTGACCTACATGATTGCGCA 133311 Query 70399 CATTACCGGCCTGAAAGCGC-ACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATT 70457 ||| || | ||| || || | || || |||||||| || ||||| || ||||| || Sbjct 133312 CATCACTGACCT-AACGCCCGGTGACTTTGTACACACTATCGGCGATGCGCACGTCTACA 133370 Query 70458 TAAATCACATCGA 70470 |||||||||||| Sbjct 133371 AAAATCACATCGA 133383 >seq13764 Length=21010 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 70339 GGGCCTCGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCA 70398 ||| || || || || || |||||||||||||| || | |||| |||||||||| || Sbjct 6899 GGGTCTAGGCGTTCCGTTCAACATTGCAAGCTACTCCTTACTGACCTACATGATTGCGCA 6958 Query 70399 CATTACCGGCCTGAAAGCGC-ACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATT 70457 ||| || | ||| || || | || || |||||||| || ||||| || ||||| || Sbjct 6959 CATCACTGACCT-AACGCCCGGTGACTTTGTACACACTATCGGCGATGCGCACGTCTACA 7017 Query 70458 TAAATCACATCGA 70470 |||||||||||| Sbjct 7018 AAAATCACATCGA 7030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740501710427080