Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2645 102 2e-16 seq8469 87.8 4e-12 seq937 87.8 4e-12 >seq2645 Length=46952 Score = 102 bits (112), Expect = 2e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 268853 ATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTC 268912 || || || || ||||||| || |||||||| || || || || ||||| |||| ||| Sbjct 12744 ATCCTGGCCTTCTTTGCAGCAAGCGATGGTATTGTCAATGAGAACCTAGTGGAGAGGTTT 12803 Query 268913 TGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGA 268971 |||||||||| ||||||||||| || |||||||| || || ||||| || ||||| || Sbjct 12804 GGTCAAGAGGTTCAGATTCCTGAGGCAAGATGTTTCTATGGCTTCCAAATGGCTATGGA 12862 >seq8469 Length=53876 Score = 87.8 bits (96), Expect = 4e-12 Identities = 118/163 (72%), Gaps = 1/163 (1%) Strand=Plus/Minus Query 268855 TCTTG-CGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCT 268913 ||||| |||| || || | || || || ||||| ||||| || || || ||| |||| Sbjct 18957 TCTTGGCGTTCTTCGCCGCCAGCGACGGCATCGTGAACGAGAACCTCGTGGAGCGGTTCA 18898 Query 268914 GTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAA 268973 | || ||||| ||| | || || || | || || ||||| |||||||| || || || | Sbjct 18897 GCCAGGAGGTTCAGGTGCCCGAGGCGCGGTGCTTCTACGGGTTCCAGATCGCCATCGAGA 18838 Query 268974 ATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016 | ||||| || ||||||||||| | || || || || || || Sbjct 18837 ACATTCACTCCGAGATGTACAGCTTGTTGATTGACACCTACAT 18795 >seq937 Length=97168 Score = 87.8 bits (96), Expect = 4e-12 Identities = 118/163 (72%), Gaps = 1/163 (1%) Strand=Plus/Minus Query 268855 TCTTG-CGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCT 268913 ||||| | || || || | || || || ||||| ||||| || || || ||| |||| Sbjct 94163 TCTTGGCCTTCTTCGCCGCCAGCGACGGCATCGTGAACGAGAACCTCGTGGAGCGGTTCA 94104 Query 268914 GTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAA 268973 | || ||||| ||| | || || || | || || ||||| |||||||| || || || | Sbjct 94103 GCCAGGAGGTTCAGGTGCCGGAGGCGCGGTGCTTCTACGGGTTCCAGATCGCCATCGAGA 94044 Query 268974 ATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016 | ||||| |||||||||||||| | || || || || || || Sbjct 94043 ACATTCACTCAGAGATGTACAGCTTGTTGATCGACACCTACAT 94001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150510562810564