Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq12024 86.0 3e-12 seq3634 82.4 4e-11 >seq12024 Length=10966 Score = 86.0 bits (94), Expect = 3e-12 Identities = 71/84 (85%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 11441 AATAAAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 ||||||||| ||| ||||| | ||| || ||||||| ||||||||||||||| |||| Sbjct 8562 AATAAAAAAGCAAGATTGGTCAATGTGGGGCTCGAACCCACGACCTTCGCGTTATCAGCA 8503 Query 11500 CGACGCTCTRACCAACTGAGCTAA 11523 ||||||||| ||| |||||||||| Sbjct 8502 CGACGCTCT-ACCGACTGAGCTAA 8480 >seq3634 Length=91840 Score = 82.4 bits (90), Expect = 4e-11 Identities = 71/87 (82%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| | |||||| | ||| || ||||||| ||||||||||||||||||||||||| Sbjct 82643 AAAAAGCCAATTGGTCGATGTGGGGCTCGAACCCACGACCTTCGCGTTATTAGCACGACG 82702 Query 11505 CTCTRACCAACTGAGCTAATGGGCCGT 11531 |||| ||| ||||||||| | |||| Sbjct 82703 CTCT-ACCGGCTGAGCTAACCGACCGT 82728 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261299401352908