Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq4379 104 2e-17 seq3742 102 7e-17 >seq4379 Length=69586 Score = 104 bits (114), Expect = 2e-17 Identities = 164/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||||| ||||| | || || | |||||||| | || || || || || | ||| | Sbjct 39055 TTTACTGCCCTCCACGCAGACGGAGAACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGT 39114 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | || || ||| | ||| |||||||| |||||| | ||||| | | ||||| | Sbjct 39115 AGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGT 39174 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 |||| || || || |||||||| | || || |||||||| ||| |||||| | Sbjct 39175 CTGGTGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGG 39234 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| |||| |||||||| || || || || || || || ||||||||||| Sbjct 39235 GCTCGACCTCAAGAGTGATGGTCTTGCCTGTCAGGGTCTTGACGAAGATCTGCAT 39289 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | || || || || || | ||| || || || ||| | ||| ||| Sbjct 40093 ACCAAGTGGAGTGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 40152 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| |||||| | ||||| | | ||||| ||||| || || || |||||||| | Sbjct 40153 AGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGG 40212 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || || ||||| ||| |||||| | | ||||| || | |||||||| || Sbjct 40213 ATCTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGAGTGATGGTCTTG 40272 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || ||||||||||| Sbjct 40273 CCTGTCAGGGTCTTGACGAAGATCTGCAT 40301 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | || || || || || | ||| || || || ||| | ||| ||| Sbjct 49716 ACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 49775 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| ||||| | ||||| | | ||||| ||||| || || || |||||||| | Sbjct 49776 AGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGG 49835 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || || ||||| ||| |||||| | | ||||| |||| |||||||| || Sbjct 49836 ATCTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTG 49895 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || ||||||||||| Sbjct 49896 CCTGTCAGGGTCTTGACGAAGATCTGCAT 49924 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| |||||| | ||||| | | ||||| ||||| || || || ||||| Sbjct 39690 ATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTT 39749 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGA 94970 ||| | || || || ||||| ||| |||||| | ||| ||||| |||| || | Sbjct 39750 GTCTTGGATCTTGGCTTTGACATTCTCGATGGTGTCA-CTTGGCTCGACCTCAAGAGTAA 39808 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || || || || || || || ||||||||||| Sbjct 39809 TGGTCTTACCCGTCAGGGTCTTGACGAAGATCTGCAT 39845 >seq3742 Length=77992 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | || || || || || | ||| || || || ||| | ||| ||| Sbjct 33228 ACCAAGTGGAGTGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 33169 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| |||||| | ||||| | | ||||| ||||| || || || |||||||| | Sbjct 33168 AGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGG 33109 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 ||||| || ||||| ||| |||||| | | ||||| |||| |||||||| || Sbjct 33108 ATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTA 33049 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || ||||||||||| Sbjct 33048 CCTGTCAGGGTCTTGACGAAGATCTGCAT 33020 Score = 100 bits (110), Expect = 3e-16 Identities = 163/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||||| ||||| | || || | |||| ||| | || || || || || | ||| | Sbjct 33482 TTTACTGCCCTCCACGCAGACGGAGAACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGT 33423 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | || || ||| | ||| |||||||| |||||| | ||||| | | ||||| | Sbjct 33422 AGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGT 33363 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 |||| || || || |||||||| | || || |||||||| ||| |||||| | Sbjct 33362 CTGGTGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGG 33303 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| |||| ||||||||||| || || | || || || ||||||||||| Sbjct 33302 GCTCGACCTCAAGGGTGATGGTTTTGCCTGTCAAGGTCTTGACGAAGATCTGCAT 33248 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | || || || || || | ||| || || || ||| | ||| ||| Sbjct 33000 ACCAAGTGGAGTGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 32941 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| |||||| ||||||| | | ||||| ||||| || || || |||||||| | Sbjct 32940 AGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGG 32881 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || || ||||| ||| |||||| | | ||||| || | |||||||| || Sbjct 32880 ATCTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGAGTGATGGTCTTG 32821 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || ||||||||||| Sbjct 32820 CCTGTCAGGGTCTTGACGAAGATCTGCAT 32792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447953956133880