Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq6839 212 1e-50 seq10071 201 2e-47 seq9974 201 2e-47 seq14266 199 6e-47 seq12544 199 6e-47 seq7486 199 6e-47 seq448 140 5e-29 seq1209 87.8 3e-13 >seq6839 Length=42407 Score = 212 bits (234), Expect = 1e-50 Identities = 210/269 (78%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||||||||||| | |||| || || |||||||| || ||||||||||| || | Sbjct 25784 CGCCAAGCGTCATCGCA-AGGTCTTGCGTGACAACATCCAGGGTATCACCAAGCCCGCAA 25726 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| |||||||| || |||||||| || |||||| |||| || || |||| ||||||| Sbjct 25725 TCCGCCGTCTGGCCCGCCGTGGTGGTGTAAAGCGTATCTCCGGTCTGATCTACGAAGAGA 25666 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| ||| | ||| |||||||| ||| ||| |||| |||||| || |||| || Sbjct 25665 CCCGTGGTGTCCTCAAGGTCTTCCTCGAGAACGTCATCCGTGATGCCGTCACCTATTGCG 25606 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || | ||||| |||||| |||||||| ||||||| || |||||||||| | Sbjct 25605 AGCACGCCAAGAGAAAGACCGTCACCGCCATGGATGTCGTCTACGCTCTGAAACGTCAGG 25546 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | || || || || ||||| Sbjct 25545 GCCGTACTCTGTACGGATTCGGCGGTTAA 25517 >seq10071 Length=22808 Score = 201 bits (222), Expect = 2e-47 Identities = 207/271 (76%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| | | || || |||||||| || ||||||||||| ||||| Sbjct 17136 CGCCAAGCGTCATCGCAAGGTTTTGCGTGACAACATCCAGGGTATCACCAAGCCCGCTAT 17195 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| |||||||| || |||||||| ||||||||| |||| || || |||| ||||||| Sbjct 17196 CCGCCGTCTGGCCCGCCGTGGTGGTGTCAAGCGTATCTCCGGTCTGATCTACGAAGAGAC 17255 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | ||| | |||||| ||| ||| |||| |||||| || ||| ||| Sbjct 17256 CCGTGGTGTCCTCAAGGTTTTCCTCGAGAACGTCATCCGTGATGCCGTCACCTACTGCGA 17315 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| |||||||| | ||||| || ||||||| || || Sbjct 17316 GCACGCCAAGAGAAAGACCGTCACCGCCATGGATGTGGTCTACGCTCTGAAACGCCAGGG 17375 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 ||||| | || || || || ||||| || Sbjct 17376 CCGTACCCTGTACGGATTCGGCGGTTAAGCT 17406 >seq9974 Length=19730 Score = 201 bits (222), Expect = 2e-47 Identities = 207/271 (76%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| | | || || |||||||| || ||||||||||| ||||| Sbjct 18731 CGCCAAGCGTCATCGCAAGGTTTTGCGTGACAACATCCAGGGTATCACCAAGCCCGCTAT 18672 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| |||||||| || |||||||| ||||||||| |||| || || |||| ||||||| Sbjct 18671 CCGCCGTCTGGCCCGCCGTGGTGGTGTCAAGCGTATCTCCGGTCTGATCTACGAAGAGAC 18612 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | ||| | |||||| ||| ||| |||| |||||| || ||| ||| Sbjct 18611 CCGTGGTGTCCTCAAGGTTTTCCTCGAGAACGTCATCCGTGATGCCGTCACCTACTGCGA 18552 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| |||||||| | ||||| || ||||||| || || Sbjct 18551 GCACGCCAAGAGAAAGACCGTCACCGCCATGGATGTGGTCTACGCTCTGAAACGCCAGGG 18492 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 ||||| | || || || || ||||| || Sbjct 18491 CCGTACCCTGTACGGATTCGGCGGTTAAGCT 18461 >seq14266 Length=8850 Score = 199 bits (220), Expect = 6e-47 Identities = 207/269 (77%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||||||| || ||| | || || |||||||| || ||||||||||| |||| Sbjct 4205 CGCCAAGCGTCATCGCAAGGTCT-TGCGTGACAACATCCAGGGTATCACCAAGCCCGCTA 4263 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| |||||||| || || ||||| ||||||||| ||||||| || |||| || |||| Sbjct 4264 TCCGCCGTCTGGCCCGCCGAGGTGGTGTCAAGCGTATCTCTGGTCTGATCTACGAGGAGA 4323 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| ||| | ||| | |||||| ||| ||| |||| |||||| | ||| || Sbjct 4324 CCCGTGGTGTCCTCAAGGTTTTCCTCGAGAACGTCATCCGTGATGCCGTTACCTACTGCG 4383 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || | ||||| |||||| |||||||| ||||||| || ||||||| || | Sbjct 4384 AGCACGCCAAGAGAAAGACCGTCACCGCCATGGATGTCGTCTACGCTCTGAAACGCCAGG 4443 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | || || || || ||||| Sbjct 4444 GCCGTACCCTGTACGGATTCGGCGGTTAA 4472 >seq12544 Length=35728 Score = 199 bits (220), Expect = 6e-47 Identities = 205/268 (76%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| | | || || |||||||| || ||||||||||| || || Sbjct 32730 CGCCAAGCGTCATCGCAAGGTTTTGCGTGACAACATCCAGGGTATCACCAAGCCCGCAAT 32789 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| |||||||| || |||||||| ||||||||| ||||||| || |||| ||||||| Sbjct 32790 CCGCCGTCTGGCCCGCCGTGGTGGTGTCAAGCGTATCTCTGGTCTGATCTACGAAGAGAC 32849 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | ||| | |||||| ||| ||| |||| |||||| || ||| ||| Sbjct 32850 CCGTGGTGTCCTCAAGGTTTTCCTCGAGAACGTCATCCGTGATGCCGTCACCTACTGCGA 32909 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| |||||||| | ||||| || ||||||| || || Sbjct 32910 GCACGCCAAGAGAAAGACCGTCACCGCCATGGATGTGGTCTACGCTCTGAAACGCCAGGG 32969 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||| | || || || || ||||| Sbjct 32970 CCGTACCCTGTACGGATTCGGCGGTTAA 32997 >seq7486 Length=50436 Score = 199 bits (220), Expect = 6e-47 Identities = 207/269 (77%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||||||| || ||| | || || |||||||| || ||||||||||| |||| Sbjct 45171 CGCCAAGCGTCATCGCAAGGTCT-TGCGTGACAACATCCAGGGTATCACCAAGCCCGCTA 45229 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || |||||||| || || ||||| ||||||||| |||| || || |||| ||||||| Sbjct 45230 TTCGCCGTCTGGCCCGCCGAGGTGGTGTCAAGCGTATCTCCGGTCTGATCTACGAAGAGA 45289 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| ||| | ||| | ||||| ||| || |||| |||||| || |||| || Sbjct 45290 CCCGTGGTGTCCTCAAGGTTTTCCTGGAGAATGTCATCCGTGATGCCGTCACCTATTGCG 45349 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || | ||||| |||||| |||||||| ||||||| || |||||||||| | Sbjct 45350 AGCACGCCAAGAGAAAGACCGTCACCGCCATGGATGTCGTCTACGCTCTGAAACGTCAGG 45409 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | || || || || ||||| Sbjct 45410 GCCGTACTCTGTACGGATTCGGCGGTTAA 45438 >seq448 Length=65928 Score = 140 bits (154), Expect = 5e-29 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| ||| |||||||||||||| |||||||| || ||||| || Sbjct 21428 GCCAAGCGACACCGCAAGGTTCTCCGAGATAACATCCAGGGAATCACTAAACCAGCCATT 21369 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| ||||| || || || |||||||||||| |||| || | |||| ||||| | Sbjct 21368 CGTCGGCTGGCCCGCCGCGGAGGAGTCAAGCGTATCTCCGGGCTCATCTACGAAGAAACC 21309 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || | ||| | ||||| ||| |||||||| ||||| || ||| |||| Sbjct 21308 CGCGGAGTCCTCAAGGTTTTCCTGGAGAACGTTATCCGCGATGCAGTCACCTACTGCGAG 21249 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAA 16662 ||||| || | ||||||||||| | ||||| | || ||||| |||| Sbjct 21248 CACGCCAAGAGGAAGACTGTCACTGCAATGGACGTGGTGTATGCGCTGAA 21199 Score = 140 bits (154), Expect = 5e-29 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| ||| |||||||||||||| |||||||| || ||||| || Sbjct 31614 GCCAAGCGACACCGCAAGGTTCTCCGAGATAACATCCAGGGAATCACTAAACCAGCCATT 31555 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| ||||| || || || |||||||||||| |||| || | |||| ||||| | Sbjct 31554 CGTCGGCTGGCCCGCCGCGGAGGAGTCAAGCGTATCTCCGGGCTCATCTACGAAGAAACC 31495 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || | ||| | ||||| ||| |||||||| ||||| || ||| |||| Sbjct 31494 CGCGGAGTCCTCAAGGTTTTCCTGGAGAACGTTATCCGCGATGCAGTCACCTACTGCGAG 31435 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAA 16662 ||||| || | ||||||||||| | ||||| | || ||||| |||| Sbjct 31434 CACGCCAAGAGGAAGACTGTCACTGCAATGGACGTGGTGTATGCGCTGAA 31385 >seq1209 Length=84171 Score = 87.8 bits (96), Expect = 3e-13 Identities = 82/102 (80%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||| | ||||| | | || |||||||| ||||| ||||| |||||||||||||| || Sbjct 75143 GCCAAGAGACATCGAAAGGTC-CTTCGAGACAACATTCAAGGGATCACCAAGCCAGCAAT 75201 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGG 16533 ||| | || || ||||| |||||||||||||| |||| || Sbjct 75202 CCGAAGGCTTGCCCGTCGAGGTGGAGTCAAGCGAATCTCCGG 75243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79020174261819