Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq8469 123 3e-23 seq937 111 2e-19 seq2645 82.4 1e-10 >seq8469 Length=53876 Score = 123 bits (136), Expect = 3e-23 Identities = 203/293 (69%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 33574 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 33633 || || || ||||| | || ||||| || || |||||||| || ||||| ||||| || Sbjct 18798 TAGGTGTCAATCAACAAGCTGTACATCTCGGAGTGAATGTTCTCGATGGCGATCTGGAAC 18857 Query 33634 CCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTT 33693 |||||||| || | ||||||| | ||| || || | || || ||| | | || Sbjct 18858 CCGTAGAAGCACCGCGCCTCGGGCACCTGAACCTCCTGGCTGAACCGCTCCACGAGGTTC 18917 Query 33694 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 33753 || ||||| || ||||| ||||| || || |||||||| || || || || | | Sbjct 18918 TCGTTCACGATGCCGTCGCTGGCGGCGAAGAACGCCAAGACGTGGGAGATGAAGTGCCTC 18977 Query 33754 TCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACT 33813 ||||| || | || | ||| || || || || || | || || || || || Sbjct 18978 TCGTCCGGCTTGAGGGACTCCCAGTCTGGGAGGTCCTTGGAGAGGTCGACCTCCTCGACC 19037 Query 33814 GTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTG 33866 ||||| || || ||||||||||| || ||||||| ||||||||| | | |||| Sbjct 19038 GTCCAGAACGACGCCTCTGCCTTCTTGTACATGTCCCAGATGTCCTGAAATTG 19090 >seq937 Length=97168 Score = 111 bits (122), Expect = 2e-19 Identities = 195/284 (69%), Gaps = 0/284 (0%) Strand=Plus/Plus Query 33574 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 33633 || || |||||||| | || ||||| || || |||||||| || ||||| ||||| || Sbjct 94004 TAGGTGTCGATCAACAAGCTGTACATCTCTGAGTGAATGTTCTCGATGGCGATCTGGAAC 94063 Query 33634 CCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTT 33693 |||||||| || | ||||| | | ||| || || | || || ||| | | || Sbjct 94064 CCGTAGAAGCACCGCGCCTCCGGCACCTGAACCTCCTGGCTGAACCGCTCCACGAGGTTC 94123 Query 33694 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 33753 || ||||| || ||||| ||||| || || || ||||| || || || || | | Sbjct 94124 TCGTTCACGATGCCGTCGCTGGCGGCGAAGAAGGCCAAGACGTGGGAGATGAAGTGCCTC 94183 Query 33754 TCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACT 33813 || || || | || | ||| || || || || || | || || || || || Sbjct 94184 TCATCCGGCTTGAGGGACTCCCAGTCTGGGAGGTCCTTGGAGAGGTCGACCTCCTCGACC 94243 Query 33814 GTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTC 33857 ||||| || || ||||||||||| || ||||||| ||||||||| Sbjct 94244 GTCCAGAACGACGCCTCTGCCTTCTTGTACATGTCCCAGATGTC 94287 >seq2645 Length=46952 Score = 82.4 bits (90), Expect = 1e-10 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCA 33447 ||||||||||| | || |||||||| || |||||||| ||||| |||||||| || ||| Sbjct 14798 AGCCAAAATATAGCTGCAAATGATCCCGAGAAGAAGATGCCTTCCACTGCAGCGAATGCA 14739 Query 33448 ATAAGTCTCTCTCCA 33462 | |||||||||||| Sbjct 14738 ACGAGTCTCTCTCCA 14724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622478564608280