Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq47842 95.1 3e-14 seq6406 95.1 3e-14 seq503 91.5 4e-13 >seq47842 Length=15337 Score = 95.1 bits (104), Expect = 3e-14 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| | || ||| |||||| || | | |||| ||||| || || || || ||| Sbjct 11368 GCTCAGTATCTCTGGCAGGCCATCGTGCAGGCCCAGACAGAGACCGGTACCCCGTACATG 11427 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 ||||||||||| | |||||| | ||| ||||||||| ||||||| || || || Sbjct 11428 CTGTACAAAGATGCCTGCAACAGTAAGAGTAACCAGCAGAACCTTGGCACCATCAAGTGC 11487 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAG 364275 || ||||| || || |||||||| || ||| || ||| |||||| Sbjct 11488 AGTAACCTGTGCACTGAGATTATCGAGTACTCCAGTCCAGACGAG 11532 >seq6406 Length=55272 Score = 95.1 bits (104), Expect = 3e-14 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| | || ||| |||||| || | | |||| ||||| || || || || ||| Sbjct 30081 GCTCAGTATCTCTGGCAGGCCATCGTGCAGGCCCAGACAGAGACCGGTACCCCGTACATG 30140 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 ||||||||||| | |||||| | ||| ||||||||| ||||||| || || || Sbjct 30141 CTGTACAAAGATGCCTGCAACAGTAAGAGTAACCAGCAGAACCTTGGCACCATCAAGTGT 30200 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAG 364275 || ||||| || ||||||||||| || ||| || || |||||| Sbjct 30201 AGTAACCTGTGCACCGAGATTATCGAGTACTCCAGCCCGGACGAG 30245 >seq503 Length=134583 Score = 91.5 bits (100), Expect = 4e-13 Identities = 132/184 (72%), Gaps = 3/184 (2%) Strand=Plus/Minus Query 22441 AAGGCAGATTGGGCGCTGAAATGGATGAACAATGAA-CGTTCA--TTCGCGGAACGTCTT 22497 ||||| || |||||||| || ||||| || ||| ||| || | || || | | Sbjct 10902 AAGGCTGACTGGGCGCTAAACTGGATTAATTCGGAAACGTCCACCTACGGTGAGAGAGTC 10843 Query 22498 ATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGG 22557 | || ||||| | ||| || || |||||||| || ||| | || | ||||||||| Sbjct 10842 GTGGCCTTTGCCGCGGTGGAGGGGATTTTCTTCTCGGGATCTTTCGCCTCCATCTTTTGG 10783 Query 22558 CTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGAT 22617 || |||||||||| | ||||| || | |||||||| |||||| | |||||||| ||| Sbjct 10782 CTGAAAAAACGTGGGTTGATGCCTGGCTTGACGTTTTCTAATGAGCTGATTAGCCGCGAT 10723 Query 22618 GAGG 22621 |||| Sbjct 10722 GAGG 10719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302348590963106