Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq4379 96.9 3e-15 seq3742 95.1 1e-14 seq4762 84.2 2e-11 >seq4379 Length=69586 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 23984 AAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGA 24043 || ||| ||||| | || || || || | || || || | || || |||| ||||| Sbjct 40308 AACCAAGATGCAGATCTTCGTCAAGACCCTGACAGGCAAGACCATCACTCTCGAGGTCGA 40249 Query 24044 GGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCC 24103 | ||| |||||||||||| | |||||| ||||| |||||||| ||||| || || Sbjct 40248 GCCCAGTGACACCATCGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGCATCCCACC 40189 Query 24104 CGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGA 24163 || || ||| | ||||| | || ||| ||||| || ||||||| | | | | | || Sbjct 40188 AGACCAGCAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGA 40129 Query 24164 TTATAACATTCAAAAAGAATCTACAATTCATTTAGT 24199 || ||||| || ||||| || ||| | || || || Sbjct 40128 CTACAACATCCAGAAAGAGTCCACACTCCACTTGGT 40093 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || | ||||| | || |||||| | | Sbjct 39845 ATGCAGATCTTCGTCAAGACCCTGACGGGTAAGACCATTACTCTTGAGGTCGAGCCAAGT 39786 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | |||||| ||||| |||||||| ||||| || || || || Sbjct 39785 GACACCATCGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCAG 39726 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | || ||| ||||| || ||||||| | | | | | || || ||| Sbjct 39725 CAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 39666 Query 24171 ATTCAAAAAGAATC 24184 || || ||||| || Sbjct 39665 ATCCAGAAAGAGTC 39652 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 23984 AAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGA 24043 || ||| ||||| | || || || || | || || || | || || | || ||||| Sbjct 49931 AACCAAGATGCAGATCTTCGTCAAGACCCTGACAGGCAAGACCATCACTCTTGAGGTCGA 49872 Query 24044 GGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCC 24103 | ||| |||||||||||| | |||||| ||||| |||||||| ||||| || || Sbjct 49871 GCCCAGTGACACCATCGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGCATCCCACC 49812 Query 24104 CGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGA 24163 || || ||| | ||||| | || || ||||| || ||||||| | | | | | || Sbjct 49811 AGACCAGCAGCGTCTGATCTTCGCTGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGA 49752 Query 24164 TTATAACATTCAAAAAGAATCTAC 24187 || ||||| || ||||| || || Sbjct 49751 CTACAACATCCAGAAAGAGTCCAC 49728 >seq3742 Length=77992 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || || || || ||| | || ||| | || |||||| ||| Sbjct 33248 ATGCAGATCTTCGTCAAGACCTTGACAGGCAAAACCATCACCCTTGAGGTCGAGCCCAGT 33307 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| ||||| |||||||| ||||| || || || || Sbjct 33308 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCAG 33367 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | || ||| ||||| || ||||||| | | | | | || || ||| Sbjct 33368 CAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 33427 Query 24171 ATTCAAAAAGAATCTAC 24187 || || ||||| || || Sbjct 33428 ATCCAGAAAGAGTCCAC 33444 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 23984 AAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGA 24043 || ||| ||||| | || || || || | || || || | || || |||| ||||| Sbjct 32785 AACCAAGATGCAGATCTTCGTCAAGACCCTGACAGGCAAGACCATCACTCTCGAGGTCGA 32844 Query 24044 GGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCC 24103 | ||| |||||||||||| | |||||| ||||| |||||||| ||||| || || Sbjct 32845 GCCCAGTGACACCATCGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGCATCCCACC 32904 Query 24104 CGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGA 24163 || || ||| | ||||| | | ||| ||||| || ||||||| | | | | | || Sbjct 32905 AGACCAGCAGCGTCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGA 32964 Query 24164 TTATAACATTCAAAAAGAATCTACAATTCATTTAGT 24199 || ||||| || ||||| || ||| | || || || Sbjct 32965 CTACAACATCCAGAAAGAGTCCACACTCCACTTGGT 33000 Score = 84.2 bits (92), Expect = 2e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 24036 GAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGC 24095 || |||||| ||| |||||||||||| | |||||| || || |||||||| ||| Sbjct 33065 GAGGTCGAGCCCAGTGACACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAAGAGGGC 33124 Query 24096 ATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC 24155 || || || || || ||| | ||||| | || ||| ||||| || ||||||| | | | | Sbjct 33125 ATCCCACCAGACCAGCAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGCACC 33184 Query 24156 GTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGT 24199 | || || ||||| || ||||| || ||| | || || || Sbjct 33185 CTGTCTGACTACAACATCCAGAAAGAGTCCACACTCCACTTGGT 33228 >seq4762 Length=92317 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 24039 GTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATA 24098 || ||| ||| ||||||||||||| | ||||| ||||| ||||| |||||||| Sbjct 80785 GTTGAGCCCAGCGACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATC 80844 Query 24099 CCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTC 24158 || || || || ||||| ||||| | || ||||||||| || || || | | | | | || Sbjct 80845 CCGCCAGACCAGCAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTC 80904 Query 24159 AGCGATTATAACATTCAAAAAGAATCTAC 24187 ||| || ||||| || || || || || Sbjct 80905 TCCGACTACAACATCCAGAAGGAGTCCAC 80933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429620650408365