Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq617 140 2e-28 seq8123 127 1e-24 seq14444 123 2e-23 seq12397 98.7 7e-16 seq9416 98.7 7e-16 seq2718 96.9 2e-15 seq4379 82.4 5e-11 >seq617 Length=136390 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 128992 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 129051 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 129052 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 129086 >seq8123 Length=40503 Score = 127 bits (140), Expect = 1e-24 Identities = 84/93 (90%), Gaps = 5/93 (5%) Strand=Plus/Minus Query 25904 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTA 25958 |||||||||||||||||| ||||||||||||||||||||||| || |||||||||| Sbjct 20673 GCCCGTTCCCTTGGCTGTAGTTTCGCTAGATAGTAGATAGGGGCAGTGGGAATCTCGTTA 20614 Query 25959 ATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||| |||||||||||||| ||||||||||||| Sbjct 20613 ATCCATTCATGCGCGTCACCAATTAGATGACGA 20581 >seq14444 Length=22526 Score = 123 bits (136), Expect = 2e-23 Identities = 83/93 (89%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 25904 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG-----GTAATCTCGTTA 25958 ||||||||| |||||||| |||||||||||||||||||||||| | |||||||||| Sbjct 7475 GCCCGTTCCTTTGGCTGTAGTTTCGCTAGATAGTAGATAGGGGCAGTTGGAATCTCGTTA 7534 Query 25959 ATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||| |||| ||||||||||||||||||||||| Sbjct 7535 ATCCATTCAAGCGCGTCACTAATTAGATGACGA 7567 >seq12397 Length=13568 Score = 98.7 bits (108), Expect = 7e-16 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 6333 TTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTT 6392 || || || || || || |||||||| || ||||| ||| ||||||||||| ||||| Sbjct 6553 TTTGGCTGTGAGCTCGGAGCTCAGACTCAATTTGACTTCAAGAACGAGCGCTTTATCGTG 6494 Query 6393 AACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTT 6452 ||||| || ||| || ||||| |||| || | || |||| ||| || | |||| | Sbjct 6493 AACGGCTCCCATGACGTGTCCAAGTTGCAAGATCTCCTGGACGTCTTCATCAGGAAGTAT 6434 Query 6453 GTGCTGTGTCGGGAATGCGATAACCCGGAGAC 6484 |||||||||| || ||||| ||||| || || Sbjct 6433 GTGCTGTGTCCCGAGTGCGACAACCCAGAAAC 6402 >seq9416 Length=13610 Score = 98.7 bits (108), Expect = 7e-16 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 6333 TTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTT 6392 || || || || || || |||||||| || ||||| ||| ||||||||||||||||| Sbjct 2841 TTTGGCTGTGAGCTCGGAGCTCAGACTCAATTTGACTTCAAGAACGAGCGCTTCATCGTG 2900 Query 6393 AACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTT 6452 ||||| || || || ||||| |||| || | || |||| ||| || | |||| | Sbjct 2901 AACGGCTCCCACGACGTGTCCAAGTTGCAAGATCTCCTGGACGTCTTCATCAGGAAGTAT 2960 Query 6453 GTGCTGTGTCGGGAATGCGATAACCCGGAGAC 6484 |||||||||| || ||||| ||||| || || Sbjct 2961 GTGCTGTGTCCCGAGTGCGACAACCCAGAAAC 2992 >seq2718 Length=47833 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||| ||| |||||||||||||||||||||||||||| | |||||||||||| Sbjct 38216 CTCTCTCTTCAGAGTGCTTTTCAACTTTCCCTCACGGTACTTGTGCTCTATCGGTCTCGT 38157 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 38156 GCAGGTATTTAGCCTT 38141 >seq4379 Length=69586 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/232 (68%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || ||| | ||||| || || ||| ||| || || || ||||| |||| Sbjct 39845 TACCACCACGCAGACGGAGAACCAAGTGGAGTGTGGACTCTTTCTGGATGTTGTAGTCAG 39904 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| || | || || | || || ||||||| || || | || || || | | Sbjct 39905 ACAGGGTGCGGCCATCTTCCAGCTGCATTACGGCAAAAATCAGATGCTGCTGGTCTGGTG 39964 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT---T 38265 ||| ||| || ||||| || || ||| ||||||| || || || |||| | Sbjct 39965 GGATGCCCTCGTTGTCTTGGATCTTGGCCTTGACATTCTTGATGGTGTC---ACTTGGCT 40021 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || | ||||| || |||||||||||||| || ||||| || ||||| Sbjct 40022 CGACCTCAAGGGTAATGGTCTTACCCGTCAAGGTCTTGACGAAGATTTGCAT 40073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334701522823073