Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq8469 125 9e-24 seq937 100 4e-16 seq47842 82.4 1e-10 seq6406 82.4 1e-10 >seq8469 Length=53876 Score = 125 bits (138), Expect = 9e-24 Identities = 204/294 (69%), Gaps = 0/294 (0%) Strand=Plus/Plus Query 32931 TATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 32990 || || |||||||| | || ||||| || || |||||||| || ||||| || || || Sbjct 18798 TAGGTGTCAATCAACAAGCTGTACATCTCGGAGTGAATGTTCTCGATGGCGATCTGGAAC 18857 Query 32991 CCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTT 33050 ||||||||||| | ||||||| | ||| || || | || || || | | || Sbjct 18858 CCGTAGAAGCACCGCGCCTCGGGCACCTGAACCTCCTGGCTGAACCGCTCCACGAGGTTC 18917 Query 33051 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 33110 || ||||| || ||||| ||||| || || |||||||| || || || || | | Sbjct 18918 TCGTTCACGATGCCGTCGCTGGCGGCGAAGAACGCCAAGACGTGGGAGATGAAGTGCCTC 18977 Query 33111 TCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACT 33170 ||||| || | || | ||| || || || || || | || || || || || Sbjct 18978 TCGTCCGGCTTGAGGGACTCCCAGTCTGGGAGGTCCTTGGAGAGGTCGACCTCCTCGACC 19037 Query 33171 GTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGA 33224 ||||| || || ||||||||||| || ||||| | ||||||||| ||| ||||| Sbjct 19038 GTCCAGAACGACGCCTCTGCCTTCTTGTACATGTCCCAGATGTCCTGAAATTGA 19091 >seq937 Length=97168 Score = 100 bits (110), Expect = 4e-16 Identities = 195/288 (68%), Gaps = 0/288 (0%) Strand=Plus/Plus Query 32931 TATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 32990 || || || ||||| | || ||||| || || |||||||| || ||||| || || || Sbjct 94004 TAGGTGTCGATCAACAAGCTGTACATCTCTGAGTGAATGTTCTCGATGGCGATCTGGAAC 94063 Query 32991 CCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTT 33050 ||||||||||| | ||||| | | ||| || || | || || || | | || Sbjct 94064 CCGTAGAAGCACCGCGCCTCCGGCACCTGAACCTCCTGGCTGAACCGCTCCACGAGGTTC 94123 Query 33051 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 33110 || ||||| || ||||| ||||| || || || ||||| || || || || | | Sbjct 94124 TCGTTCACGATGCCGTCGCTGGCGGCGAAGAAGGCCAAGACGTGGGAGATGAAGTGCCTC 94183 Query 33111 TCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACT 33170 || || || | || | ||| || || || || || | || || || || || Sbjct 94184 TCATCCGGCTTGAGGGACTCCCAGTCTGGGAGGTCCTTGGAGAGGTCGACCTCCTCGACC 94243 Query 33171 GTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 33218 ||||| || || ||||||||||| || ||||| | ||||||||| ||| Sbjct 94244 GTCCAGAACGACGCCTCTGCCTTCTTGTACATGTCCCAGATGTCCTGA 94291 >seq47842 Length=15337 Score = 82.4 bits (90), Expect = 1e-10 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 62798 ATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTT 62857 || ||||||||||| || ||||| ||||||||||| || | || || || |||||||| Sbjct 11510 ATAATCTCAGTGCACAGGTTACTGCACTTGATGGTGCCAAGGTTCTGCTGGTTACTCTTA 11451 Query 62858 TTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTG 62907 |||| || ||||| || || || ||| | || ||||| || || |||| Sbjct 11450 CTGTTGCAGGCATCTTTGTACAGCATGTACGGGGTACCGGTCTCTGTCTG 11401 >seq6406 Length=55272 Score = 82.4 bits (90), Expect = 1e-10 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 62798 ATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTT 62857 || ||||| ||||| || ||||||||||||||||| || | || || || |||||||| Sbjct 30223 ATAATCTCGGTGCACAGGTTACTACACTTGATGGTGCCAAGGTTCTGCTGGTTACTCTTA 30164 Query 62858 TTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTG 62907 |||| || ||||| || || || ||| | || ||||| || || |||| Sbjct 30163 CTGTTGCAGGCATCTTTGTACAGCATGTACGGGGTACCGGTCTCTGTCTG 30114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633155326566800