Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2645 116 4e-21 seq503 114 1e-20 >seq2645 Length=46952 Score = 116 bits (128), Expect = 4e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 93406 CTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGA 93465 |||||| || |||||||| || ||||||||||| || || | ||||| || |||||| Sbjct 12863 CTCCATAGCCATTTGGAAGCCATAGAAACATCTTGCCTCAGGAATCTGAACCTCTTGACC 12804 Query 93466 AAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATAT 93525 ||| ||||| || || || |||||||| ||||||||| ||||||||| || |||| || Sbjct 12803 AAACCTCTCCACTAGGTTCTCATTGACAATACCATCGCTTGCTGCAAAGAAGGCCAGGAT 12744 Query 93526 ATGCTTTATAAAATGTTTCTCA 93547 ||||| || |||| | |||| Sbjct 12743 GTGCTTGATGAAATACTGCTCA 12722 >seq503 Length=134583 Score = 114 bits (126), Expect = 1e-20 Identities = 200/291 (69%), Gaps = 0/291 (0%) Strand=Plus/Plus Query 93346 CTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATT 93405 ||| |||| |||| ||||| || ||||| |||| |||||||| || || | || Sbjct 11084 CTCTTCCGGGTCTCTGATGTAGGTGTCGATCAACAAGCTGTACATTTCCGAGTGAATGTT 11143 Query 93406 CTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGA 93465 |||||| | | || || ||||| || |||| || || | ||| || ||||||| Sbjct 11144 CTCCATGGTGAACTGAAACCCGTAAAAGCATCGCGCCTCAAGTACCTGAACCTCTTGAGT 11203 Query 93466 AAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATAT 93525 ||| | || | ||| ||||| || || || || ||| || || || |||||||| | Sbjct 11204 AAAACGCTGAAGGAGGTTTTCGTTTACAATGCCGTCGCTGGCCGCGAAGAAAGCCAAAAC 11263 Query 93526 ATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGA 93585 || || || | | |||| || || || ||||| | | ||| || || || Sbjct 11264 GTGAGAGATGAATTTTCTCTCCTCCCGCTTGAGAGATTCCCAGTGTGGTAGGTCCTTCGA 11323 Query 93586 AAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACAT 93636 ||||| ||||||||||| ||||| || || |||| |||||| |||||||| Sbjct 11324 GAGATCAACTTCTTCGACCGTCCAGAATGAAGCTTTTGCTTTCTTGTACAT 11374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556441880580920