Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq6406 87.8 2e-12 seq9089 86.0 5e-12 >seq6406 Length=55272 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 129738 GTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATT 129797 |||||||| ||| |||| ||||| |||||| || |||||||| | | || || || Sbjct 30230 GTACTCGATAATCTCGGTGCACAGGTTACTACACTTGATGGTGCCAAGGTTCTGCTGGTT 30171 Query 129798 ACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTC 129848 ||| || ||||||| ||||||||||||| ||||||||| || || || || Sbjct 30170 ACTCTTACTGTTGCAGGCATCTTTGTACAGCATGTACGGGGTACCGGTCTC 30120 >seq9089 Length=72386 Score = 86.0 bits (94), Expect = 5e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCG 22333 ||| ||| ||| | || || |||| || || || |||||||| || || || || | Sbjct 51997 CCAGCGACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCGCCAG 52056 Query 22334 ATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATT 22393 | || || | || || ||||||||||| ||| | ||||| ||||||| ||||||| | Sbjct 52057 ACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTCTCCGACT 52116 Query 22394 ACAACATTCAAAAAGAATCCAC 22415 ||||||| || || || ||||| Sbjct 52117 ACAACATCCAGAAGGAGTCCAC 52138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419420137775395