Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq4379 138 3e-27 seq3742 138 3e-27 seq4762 84.2 5e-11 >seq4379 Length=69586 Score = 138 bits (152), Expect = 3e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | || ||||| || ||||| | || ||||| |||||| Sbjct 40111 TCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCGAAG 40170 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || |||||| || ||||| || ||||| || ||||| || || Sbjct 40171 ATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGATCTTGGCTTTGACATTC 40230 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || ||||| ||||| ||||| || ||||| ||||||||| Sbjct 40231 TCGATGGTGTCACTGGGCTCGACCTCGAGAGTGATGGTCTTGCCTGTCAGGGTCTTGACG 40290 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 40291 AAGATCTGCAT 40301 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | || ||||| || ||||| | || ||||| |||||| Sbjct 49734 TCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCAGCGAAG 49793 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || |||||| || ||||| || ||||| || ||||| || || Sbjct 49794 ATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGATCTTGGCTTTGACATTC 49853 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || ||||| ||||| || ||||| ||||||||| Sbjct 49854 TCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTGCCTGTCAGGGTCTTGACG 49913 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 49914 AAGATCTGCAT 49924 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | || ||||| || ||||| | || ||||| |||||| Sbjct 39099 TCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCGAAG 39158 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || |||||| || ||||| || ||||| || || || || || Sbjct 39159 ATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTC 39218 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || ||||| ||||| || ||||| ||||||||| Sbjct 39219 TCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTGCCTGTCAGGGTCTTGACG 39278 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 39279 AAGATCTGCAT 39289 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | || ||||| || ||||| | || ||||| |||||| Sbjct 39655 TCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCGAAG 39714 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || |||||| || ||||| || ||||| || ||||| || || Sbjct 39715 ATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGATCTTGGCTTTGACATTC 39774 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || || || ||||| || ||||| ||||||||| Sbjct 39775 TCGATGGTGTCACTTGGCTCGACCTCAAGAGTAATGGTCTTACCCGTCAGGGTCTTGACG 39834 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 39835 AAGATCTGCAT 39845 Score = 84.2 bits (92), Expect = 5e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | || ||||| || ||||| | || || | || || Sbjct 39883 TCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCATTACGGCAAAA 39942 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||||| |||| || |||||| || || || || ||||| || || || || || Sbjct 39943 ATCAGATGCTGCTGGTCTGGTGGGATGCCCTCGTTGTCTTGGATCTTGGCCTTGACATTC 40002 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 | || | || || | || || || || || || ||||| || |||| ||||||||| Sbjct 40003 TTGATGGTGTCACTTGGCTCGACCTCAAGGGTAATGGTCTTACCCGTCAAGGTCTTGACG 40062 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 40063 AAGATTTGCAT 40073 >seq3742 Length=77992 Score = 138 bits (152), Expect = 3e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | || ||||| || ||||| | || ||||| |||||| Sbjct 33210 TCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCGAAG 33151 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || |||||| || ||||| || |||||||| ||||| || || Sbjct 33150 ATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGATTTTGGCTTTGACATTC 33091 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || ||||| ||||| || ||||| ||||||||| Sbjct 33090 TCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTACCTGTCAGGGTCTTGACG 33031 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 33030 AAGATCTGCAT 33020 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | || ||||| || ||||| | || ||||| || ||| Sbjct 32982 TCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAG 32923 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || |||||| || ||||| || ||||| || ||||| || || Sbjct 32922 ATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGATCTTGGCTTTGACATTC 32863 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || ||||| ||||| ||||| || ||||| ||||||||| Sbjct 32862 TCGATGGTGTCACTGGGCTCGACCTCGAGAGTGATGGTCTTGCCTGTCAGGGTCTTGACG 32803 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 32802 AAGATCTGCAT 32792 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | || ||||| || ||||| | || ||||| |||||| Sbjct 33438 TCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCGAAG 33379 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || |||||| || ||||| || ||||| || || || || || Sbjct 33378 ATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTC 33319 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || ||||| || || || |||| ||||||||| Sbjct 33318 TCGATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTTTTGCCTGTCAAGGTCTTGACG 33259 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 33258 AAGATCTGCAT 33248 >seq4762 Length=92317 Score = 84.2 bits (92), Expect = 5e-11 Identities = 123/173 (71%), Gaps = 6/173 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || || || || || || || | |||| || || ||||| || ||||||| | Sbjct 80963 CCGCCCCGCAGCCTCAGCACCAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGAG 80904 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || ||||| ||||| || | || || || ||||||||||| | ||| || ||| Sbjct 80903 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTG---GTCTGGC 80847 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCT 288416 ||||| ||||| || |||||||| || || || || || || || | ||||| Sbjct 80846 GGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCGCT 80794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178744774759074