Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq3742 122 9e-23 seq4379 116 4e-21 seq9089 105 7e-18 seq4762 100 3e-16 seq1253 84.2 2e-11 >seq3742 Length=77992 Score = 122 bits (134), Expect = 9e-23 Identities = 149/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || |||||||| || | | |||||| | ||||| |||||||| ||| Sbjct 32988 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCG 32929 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || || ||||||||||| || || || || ||||| ||||| | | || ||||| Sbjct 32928 GCAAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGA-TCTTGGCTTT 32870 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| ||| | || |||| || || || || | ||| | ||||||||| |||| || Sbjct 32869 GACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGAGTGATGGTCTTGCCTGTCAGGGT 32810 Query 64426 TTTTACGAAAATTTGCATTTT 64446 || ||||| || ||||| || Sbjct 32809 CTTGACGAAGATCTGCATCTT 32789 Score = 116 bits (128), Expect = 4e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || |||||||| || | | |||||| | ||||| |||||||| ||| Sbjct 33216 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCG 33157 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || || ||||||||||| || || || || ||||| ||||| | |||| ||||| Sbjct 33156 GCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGA-TTTTGGCTTT 33098 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| ||| | || |||| || || || || | ||| | |||||| || |||| || Sbjct 33097 GACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTACCTGTCAGGGT 33038 Query 64426 TTTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 33037 CTTGACGAAGATCTGCAT 33020 Score = 113 bits (124), Expect = 5e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || |||||||| || | | |||||| | ||||| |||||||| ||| Sbjct 33444 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCG 33385 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || || ||||||||||| || || || || ||||| ||||| || || ||| Sbjct 33384 GCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTG 33325 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || |||| || || || || | || | ||| ||||| ||||| || Sbjct 33324 ACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTTTTGCCTGTCAAGGTC 33265 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 33264 TTGACGAAGATCTGCAT 33248 >seq4379 Length=69586 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || |||||||| || | | |||||| | ||||| |||||||| ||| Sbjct 39093 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCG 39152 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || || ||||||||||| || || || || ||||| ||||| || || ||| Sbjct 39153 GCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTG 39212 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || |||| || || || || | ||| | ||||||||| |||| || Sbjct 39213 ACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTGCCTGTCAGGGTC 39272 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 39273 TTGACGAAGATCTGCAT 39289 Score = 116 bits (128), Expect = 4e-21 Identities = 148/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || |||||||| || | | |||||| | ||||| |||||||| ||| Sbjct 40105 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCG 40164 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || || ||||||||||| || || || || ||||| ||||| | | || ||||| Sbjct 40165 GCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGA-TCTTGGCTTT 40223 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| ||| | || |||| || || || || | ||| | ||||||||| |||| || Sbjct 40224 GACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGAGTGATGGTCTTGCCTGTCAGGGT 40283 Query 64426 TTTTACGAAAATTTGCATTTT 64446 || ||||| || ||||| || Sbjct 40284 CTTGACGAAGATCTGCATCTT 40304 Score = 113 bits (124), Expect = 5e-20 Identities = 147/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || |||||||| || | | |||||| | ||||| |||||||| || Sbjct 49728 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCA 49787 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || || ||||||||||| || || || || ||||| ||||| | | || ||||| Sbjct 49788 GCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGA-TCTTGGCTTT 49846 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| ||| | || |||| || || || || | ||| | ||||||||| |||| || Sbjct 49847 GACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTGCCTGTCAGGGT 49906 Query 64426 TTTTACGAAAATTTGCATTTT 64446 || ||||| || ||||| || Sbjct 49907 CTTGACGAAGATCTGCATCTT 49927 Score = 105 bits (116), Expect = 7e-18 Identities = 142/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 64250 GATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCA 64309 || ||||| || |||||||| || | | |||||| | ||||| |||||||| ||||| Sbjct 39652 GACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCG 39711 Query 64310 TAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT-AC 64368 | || || ||||||||||| || || || || ||||| ||||| | | || ||||| || Sbjct 39712 AAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGA-TCTTGGCTTTGAC 39770 Query 64369 AACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTT 64428 | ||| | || |||| | || || || | ||| | |||||| || |||| || || Sbjct 39771 ATTCTCGATGGTGTCACTTGGCTCGACCTCAAGAGTAATGGTCTTACCCGTCAGGGTCTT 39830 Query 64429 TACGAAAATTTGCAT 64443 ||||| || ||||| Sbjct 39831 GACGAAGATCTGCAT 39845 Score = 82.4 bits (90), Expect = 8e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || |||||||| || | | |||||| | ||||| |||||||| ||| Sbjct 39463 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCG 39522 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 || | || || ||||||||||| || || || || ||||| ||||| || || Sbjct 39523 GCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGATCTT 39575 >seq9089 Length=72386 Score = 105 bits (116), Expect = 7e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| |||| || ||||| || || | ||| || || || || |||||||| || | | Sbjct 52168 CCGCCCCGCAGCCTCAGCACCAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGAG 52109 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| |||| || ||||||||||||||| | || |||| ||||||||| || || Sbjct 52108 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGCGGG 52049 Query 64337 ATTCCTTCTTTTTCTTGTATTTT 64359 || ||||| || || || || || Sbjct 52048 ATGCCTTCCTTGTCCTGGATCTT 52026 >seq4762 Length=92317 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| |||| || ||||| || || | ||| || || || || |||||||| || | | Sbjct 80963 CCGCCCCGCAGCCTCAGCACCAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGAG 80904 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| |||| || |||||||||||||| | || |||| ||||||||| || || Sbjct 80903 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGCGGG 80844 Query 64337 ATTCCTTCTTTTTCTTGTATTTT 64359 || ||||| || || || || || Sbjct 80843 ATGCCTTCCTTGTCCTGGATCTT 80821 >seq1253 Length=217781 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 64254 CTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAA 64313 ||||||| |||||||| |||| | |||||| | || || ||||||||||||||| | | Sbjct 146620 CTTTTTGGATGTTGTAGTCTGACAGTGTGCGCCCATCCTCGAGCTGCTTGCCGGCAAAGA 146679 Query 64314 TGAGCCGCTGCTGGTCGGGAGGAATTCCT 64342 | | || ||||||||| |||||||| ||| Sbjct 146680 TCAACCTCTGCTGGTCCGGAGGAATACCT 146708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499268923462520