Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq47842 104 2e-17 seq6406 104 2e-17 >seq47842 Length=15337 Score = 104 bits (114), Expect = 2e-17 Identities = 145/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 94174 GGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTG 94233 ||| | || || |||| || |||||||||||||| ||| | | |||| | || ||| Sbjct 10362 GGTGCCTTTGCCATCTACCTGGAGCCCTGGCACGCCGACATCTTTGATTTCCTGGA-CTG 10420 Query 94234 CGA-AAGAACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGT 94292 | | |||||||||||||| || | || ||||| | ||||||||||||| |||||| | Sbjct 10421 CAAGAAGAACCACGGCAAGGAGGAGCAGCGGGCCCGCGACCTCTTCTACGGACTCTGGAT 10480 Query 94293 GCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAA 94352 |||||||| || |||| ||||| ||| ||| | |||| | || | || ||||| Sbjct 10481 ACCAGACCTGTTCATGAGGCGCGTGGAGGGGAACCAAGACTGGTGCCTGATGTGCCCCAA 10540 Query 94353 TGAATGTCCCGGACTGTCCGA 94373 || || || || |||| || Sbjct 10541 CGAGTGCCCAGGCTTGTCGGA 10561 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 95102 TGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAAC 95161 |||||||||||||||| ||||||||||| |||||||| ||||| |||||||| | || | Sbjct 14079 TGGCCCCCATGCCCACCGCCTCCACGGCTCAGATCCTGGGCAATAACGAGTCCATTGAGC 14138 Query 95162 CCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCC 95209 | | |||| |||| | |||| | ||||||| | || ||||||| Sbjct 14139 CATACACCAGCAACATCTACACTCGCAGGGTGCTGTCTGGTGAATTCC 14186 >seq6406 Length=55272 Score = 104 bits (114), Expect = 2e-17 Identities = 145/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 94174 GGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTG 94233 ||| | || || |||| || |||||||||||||| ||| | | |||| | || ||| Sbjct 29079 GGTGCCTTTGCCATCTACCTGGAGCCCTGGCACGCCGACATCTTTGATTTCCTGGA-CTG 29137 Query 94234 CGA-AAGAACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGT 94292 | | |||||||||||||| || | || ||||| | ||||||||||||| |||||| | Sbjct 29138 CAAGAAGAACCACGGCAAGGAGGAGCAGCGGGCCCGCGACCTCTTCTACGGACTCTGGAT 29197 Query 94293 GCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAA 94352 |||||||| || |||| ||||| ||| ||| | |||| | || | || ||||| Sbjct 29198 ACCAGACCTGTTCATGAGGCGCGTGGAGGGGAACCAAGACTGGTGCCTGATGTGCCCCAA 29257 Query 94353 TGAATGTCCCGGACTGTCCGA 94373 || || || || |||| || Sbjct 29258 CGAGTGCCCGGGCTTGTCGGA 29278 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 95102 TGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAAC 95161 ||||||||||||| || ||||||||||| |||||||| |||||||||||||| | || | Sbjct 33102 TGGCCCCCATGCCTACCGCCTCCACGGCTCAGATCCTGGGCAACAACGAGTCCATTGAGC 33161 Query 95162 CCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCC 95209 | | |||| |||| | |||| | ||||||| | || ||||||| Sbjct 33162 CGTACACCAGCAACATCTACACTCGCAGGGTGCTGTCTGGTGAATTCC 33209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494351025920680