Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq6406 93.3 4e-14 seq47842 84.2 2e-11 >seq6406 Length=55272 Score = 93.3 bits (102), Expect = 4e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 123606 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGC 123665 || ||||| || ||||||||||| |||||||| ||||||||||| || | || ||| Sbjct 30120 GAGACCGGTACCCCGTACATGCTGTACAAAGATGCCTGCAACAGTAAGAGTAACCAGCAG 30179 Query 123666 AACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATAC 123716 ||| | || || || || |||||||| || ||| |||| |||||||| ||| Sbjct 30180 AACCTTGGCACCATCAAGTGTAGTAACCTGTGCACCGAGATTATCGAGTAC 30230 >seq47842 Length=15337 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 123606 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGC 123665 || ||||| || ||||||||||| |||||||| ||||||||||| || | || ||| Sbjct 11407 GAGACCGGTACCCCGTACATGCTGTACAAAGATGCCTGCAACAGTAAGAGTAACCAGCAG 11466 Query 123666 AACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATAC 123716 ||| | || || || || || ||||| || ||| | || |||||||| ||| Sbjct 11467 AACCTTGGCACCATCAAGTGCAGTAACCTGTGCACTGAGATTATCGAGTAC 11517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451663163642680