Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq6406 95.1 2e-14 seq503 91.5 2e-13 seq47842 89.7 8e-13 >seq6406 Length=55272 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/134 (77%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 203945 TTGCTCACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGC 204004 |||| | ||| || | || ||||||||||| || |||||||| ||||| ||| |||| Sbjct 34526 TTGCCAAAGTTAGGCGCTGCAATGTGAATGTTGAGCGACTGGCTCTGGTCAATG-TAGGC 34468 Query 204005 GCC-CGATCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAA 204063 || ||||| || ||||| |||| |||| ||||||| || |||||||| || |||||| | Sbjct 34467 ACCGCGATCGGCTGCCATCTTGAGAATGTTCTTCTGGGAGATCTCCCAGACTGTCTTGTA 34408 Query 204064 CACGTCTCTGGTGT 204077 | || |||||| Sbjct 34407 TAGTTCCTTGGTGT 34394 Score = 86.0 bits (94), Expect = 1e-11 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 204196 CTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGC 204255 ||| || || || |||||||||| || ||| | | |||| ||||| | || || | | Sbjct 33211 CTGGAATTCACCAGACAGCACCCTGCGAGTGTAGATGTTGCTGGTGTACGGCTCAATGGA 33152 Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGA 204315 |||||||||||| | |||||||| ||| ||| || |||||||| ||||| || || Sbjct 33151 CTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCGGTAGGCATGGGGGCCAGCAGGAGACT 33092 Query 204316 GTTGCGCACACCGTATTTTTGGACCCTGCG-CTTCAGAGAGGTCCAGTCGTGCATCGCAC 204374 ||| | | ||||| || | | | || |||||| | || |||||| |||| | Sbjct 33091 GTTCCTGAGCCCGTA-CTTGGCAATGTCCGCCTTCAGGGCGGCCCAGTCTTGCAGGTCCG 33033 Query 204375 TGGGTTTCACGCCCCACATGTCGAACTGAAAGAT 204408 | || | ||| |||||| ||| |||| | ||| Sbjct 33032 TCGGGGTGACGTTCCACATATCGTACTGCAGGAT 32999 >seq503 Length=134583 Score = 91.5 bits (100), Expect = 2e-13 Identities = 152/219 (69%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 160216 GTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTC 160275 ||||||||| | ||| | || || |||| | |||||| ||| || || |||||| Sbjct 11123 GTACATTTCCGAGTGAATGTTCTCCATGGTGAACTGAAACCCGTAAAAGCATCGCGCCTC 11182 Query 160276 CAGATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGC 160335 || ||| ||||| || || || | ||| || || | || || | |||||| Sbjct 11183 AAGTACCTGAACCTCTTGAGTAAAACGCTGAAGGAGGTTTTCGTTTACAATGCCGTCGCT 11242 Query 160336 GGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTT 160395 |||||| ||||||||||| |||||||||||||| | |||||| || ||||| Sbjct 11243 GGCCGCGAAGAAAGCCAAAACGTGAGAGATGAATTTTCTCTCCTCCCGCTTGAG---AGA 11299 Query 160396 TTCCCAGTGTGTCACGTCTTGGGCCAAATCAACCTCTTC 160434 ||||||||||| | ||| | | | |||||| ||||| Sbjct 11300 TTCCCAGTGTGGTAGGTCCTTCGAGAGATCAACTTCTTC 11338 >seq47842 Length=15337 Score = 89.7 bits (98), Expect = 8e-13 Identities = 151/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 204196 CTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGC 204255 ||| || || || |||||||||| || ||| | | |||| ||||| |||| || | | Sbjct 14188 CTGGAATTCACCAGACAGCACCCTGCGAGTGTAGATGTTGCTGGTGTATGGCTCAATGGA 14129 Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGA 204315 |||||| ||||| | |||||||| ||| ||| ||||||||||| ||||| || || Sbjct 14128 CTCGTTATTGCCCAGGATCTGAGCCGTGGAGGCGGTGGGCATGGGGGCCAGCAGAAGACT 14069 Query 204316 GTTGCGCACACCGTATTTTTGGACCCTG-CG--CTTCAGAGAGGTCCAGTCGTGCATCGC 204372 ||| | | ||||| || | | || || |||||| | || |||||| |||| | Sbjct 14068 GTTCCTGAGCCCGTACTT---GGCAATGTCGGCCTTCAGGGCGGCCCAGTCTTGCAGGTC 14012 Query 204373 ACTGGGTTTCACGCCCCACATGTCGAACTGAAAGAT 204408 | || | ||| |||||| ||| |||| | ||| Sbjct 14011 TGTCGGGGTGACGTTCCACATATCGTACTGCAGGAT 13976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794557014682480