Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq4379 125 2e-23 seq3742 123 6e-23 seq4762 102 2e-16 seq9089 96.9 8e-15 >seq4379 Length=69586 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | |||||| || ||||| || |||| ||||||||||| || || | |||||| Sbjct 39078 AGAACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 39137 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||||||||||||||| |||||||||||||| || || || ||| || Sbjct 39138 TCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCT 39197 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| |||||| | | || || || | ||||| ||| Sbjct 39198 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTC 39257 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || || || || || Sbjct 39258 TTGCCTGTCAGGGTCTTGACGAAGATCTG 39286 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 199436 GACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCG 199495 ||||| || |||| ||||||||||| || || | |||||||||||||||||||||||| Sbjct 39652 GACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCG 39711 Query 199496 AAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACG 199555 ||||| |||||||||||||| || || || ||| || || ||||| || || Sbjct 39712 AAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGATCTTGGCTTTGACA 39771 Query 199556 GATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTC 199615 |||| |||||| ||| || || || | || || ||||||||||| || || || Sbjct 39772 TTCTCGATGGTGTCACTTGGCTCGACCTCAAGAGTAATGGTCTTACCCGTCAGGGTCTTG 39831 Query 199616 ACAAAAATTTG 199626 || || || || Sbjct 39832 ACGAAGATCTG 39842 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | |||||| || ||||| || |||| ||||||||||| || || | |||||| Sbjct 40090 AGAACCAAGTGGAGTGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 40149 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||||||||||||||| |||||||||||||| || || || ||| || Sbjct 40150 TCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCT 40209 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| || || |||| |||||| | | || || || | ||||| ||| Sbjct 40210 TGGATCTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGAGTGATGGTC 40269 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || || || || || Sbjct 40270 TTGCCTGTCAGGGTCTTGACGAAGATCTG 40298 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | |||||| || ||||| || |||| ||||||||||| || || | |||||| Sbjct 49713 AGAACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 49772 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||||||||||||| |||||||| |||||||||||||| || || || ||| || Sbjct 49773 TCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCT 49832 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| || || |||| |||||| | | || || || | ||||| ||| Sbjct 49833 TGGATCTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTC 49892 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || || || || || Sbjct 49893 TTGCCTGTCAGGGTCTTGACGAAGATCTG 49921 Score = 113 bits (124), Expect = 1e-19 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | |||||| || ||||| || |||| ||||||||||| || || | |||||| Sbjct 39448 AGAACCAAGTGGAGTGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 39507 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||||||||||||||| |||||||||||||| || || || ||| || Sbjct 39508 TCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCT 39567 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTC 199569 || ||||| ||| || |||| |||||| Sbjct 39568 TGGATCTTGGCCTTGACATTCTCGATGGTGTC 39599 Score = 105 bits (116), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | |||||| || ||||| || |||| ||||||||||| || || | |||||| Sbjct 39862 AGAACCAAGTGGAGTGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 39921 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||| || |||| || || ||| |||||||||| || || || || || Sbjct 39922 TCCAGCTGCATTACGGCAAAAATCAGATGCTGCTGGTCTGGTGGGATGCCCTCGTTGTCT 39981 Query 199538 TGAATCTTTTGCTTCACGGATTC--GACGGTGTCTGTTGTTTCTACATCCAACGTGATCG 199595 || ||||| ||| || |||| || |||||| ||| || || || | || || | Sbjct 39982 TGGATCTTGGCCTTGAC--ATTCTTGATGGTGTCACTTGGCTCGACCTCAAGGGTAATGG 40039 Query 199596 TCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||||| | || || || || ||||| Sbjct 40040 TCTTACCCGTCAAGGTCTTGACGAAGATTTG 40070 Score = 84.2 bits (92), Expect = 5e-11 Identities = 141/202 (70%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 ||||| || |||| | | || ||||||||||| || || | ||||||||||||||| Sbjct 49494 TGGAGGGTGAACTCTCTCTTGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGC 49553 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || |||| || || ||| |||||||||| || || || || || || ||||| Sbjct 49554 ATTACGGCAAAAATCAGATGCTGCTGGTCTGGTGGGATGCCCTCGTTGTCTTGGATCTTG 49613 Query 199547 TGCTTCACGGATTC--GACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCG 199604 ||| || |||| || |||||| ||| || || || | || || |||||||||| Sbjct 49614 GCCTTGAC--ATTCTTGATGGTGTCACTTGGCTCGACCTCAAGGGTAATGGTCTTACCCG 49671 Query 199605 TGAGAGTTTTCACAAAAATTTG 199626 | | || || || || || || Sbjct 49672 TCAAGGTCTTGACGAAGATCTG 49693 >seq3742 Length=77992 Score = 123 bits (136), Expect = 6e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | |||||| || ||||| || |||| ||||||||||| || || | |||||| Sbjct 33231 AGAACCAAGTGGAGTGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 33172 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||||||||||||||| |||||||||||||| || || || ||| || Sbjct 33171 TCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCT 33112 Query 199538 TGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || || ||| || || || |||| |||||| | | || || || | ||||| || Sbjct 33111 TGGAT-TTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGT 33053 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||| || || || || || || || || Sbjct 33052 CTTACCTGTCAGGGTCTTGACGAAGATCTG 33023 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || |||||||| || ||||| || |||| ||||||||||| || || | |||||| Sbjct 33459 AGAACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 33400 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||||||||||||||| |||||||||||||| || || || ||| || Sbjct 33399 TCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCT 33340 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| |||||| | | || || || | ||||| || Sbjct 33339 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTT 33280 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || || || || || || Sbjct 33279 TTGCCTGTCAAGGTCTTGACGAAGATCTG 33251 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | |||||| || ||||| || |||| ||||||||||| || || | |||||| Sbjct 33003 AGAACCAAGTGGAGTGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 32944 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||||||||| ||||| |||||||||||||| || || || ||| || Sbjct 32943 TCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCT 32884 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| || || |||| |||||| | | || || || | ||||| ||| Sbjct 32883 TGGATCTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGAGTGATGGTC 32824 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || || || || || Sbjct 32823 TTGCCTGTCAGGGTCTTGACGAAGATCTG 32795 Score = 84.2 bits (92), Expect = 5e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 || |||||||||||||||||| |||||||||| | || || | || |||||| ||||| Sbjct 33374 CTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACATCCAG 33433 Query 200995 AAAGAGTCTACTCTTCACCTTGTT 201018 |||||||| || || ||||| ||| Sbjct 33434 AAAGAGTCCACCCTCCACCTGGTT 33457 >seq4762 Length=92317 Score = 102 bits (112), Expect = 2e-16 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || ||||| || |||||||| || |||||||| |||| ||||||||| | | || Sbjct 80957 CGCAGCCTCAGCACCAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTG 80898 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| ||||||||||| || | ||||||||| || || ||| Sbjct 80897 CGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGCGGGATGCCT 80838 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTC 199569 || ||||| ||||| ||| || |||| |||||| Sbjct 80837 TCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTC 80797 >seq9089 Length=72386 Score = 96.9 bits (106), Expect = 8e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || ||||| || |||||||| || |||||||| |||| ||||||||| | | || Sbjct 52162 CGCAGCCTCAGCACCAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTG 52103 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| ||||| ||||| || | ||||||||| || || ||| Sbjct 52102 CGGCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGCGGGATGCCT 52043 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTC 199569 || ||||| ||||| ||| || |||| |||||| Sbjct 52042 TCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTC 52002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178012539817261