Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq49 268 7e-66 >seq49 Length=210639 Score = 268 bits (296), Expect = 7e-66 Identities = 719/1079 (67%), Gaps = 24/1079 (2%) Strand=Plus/Minus Query 517265 ACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTC 517324 || || || ||||| || ||||| | || || | ||||||||| | || || || | Sbjct 24639 ACGTTGAGTATACCGTTAGCATCAATGTCTAAGGAGACTTCAATCTTGGGTACACCGCGA 24580 Query 517325 TGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAAT 517384 |||| || ||||| || | | | ||| | |||||| ||| || ||||| || | Sbjct 24579 GGAGCTGGAGGGATGCCAGCTAGCTCAAAGATGCCCAGACGATTGTTGTCTTTTGTCATA 24520 Query 517385 TTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTA 517444 || ||| || || | | |||||| |||||| ||| || || || | ||| || || Sbjct 24519 GCTCTTTCTCCTTCATAGACTTGGATCGTAACTGCAGGCTGGTTGTCAGCATAGGTGGTG 24460 Query 517445 AATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATA 517504 ||| ||||| | || || || ||||||| || || | |||||||| ||| Sbjct 24459 AATGTCTTGGATGTCTTGGTTGGGATGCGGCTGTTTCTCTCGATCAGTTTGGTCATGATA 24400 Query 517505 CCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGA 517564 || || || || || | ||||| ||||||||||| ||||| || || | || || || Sbjct 24399 CCCCCAGCAGTCTCAATGCCAAGTGAAAGAGGAGTAACATCCACAAGAAGAACATCTTTG 24340 Query 517565 AGTTTTTCA-TCAGTTTGACCAA-CAAGAATAGCTGCTTGAATAGCAGCACCATATGCAA 517622 | | | || || | | |||| ||||| | |||||||| | |||||| ||||| || | Sbjct 24339 ACCTCTGCACTCTGGTC-ACCACTCAAGA-TGGCTGCTTGTACAGCAGCTCCATAAGCTA 24282 Query 517623 CAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-TTGAAAGA 517681 | || ||||| ||||| | | | || | | ||| || |||| ||| ||| || | Sbjct 24281 CTGCCTCATCTGGATTGATGGATCTGTTCAAGTCTTTTCCGTTGAGGTAATCTTGCAACA 24222 Query 517682 AGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGT 517741 || | | ||| || || || | || |||||||| | |||| |||| | || Sbjct 24221 GCTTCTGA-ATCTTGGGGATTCGTGTGGAGCCTCCAACCAGCACAACCTCATCAA--TGC 24165 Query 517742 GATT--TATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAA 517799 |||| | || | ||||| ||||| || | || || || | ||| | | | | Sbjct 24164 GATTCTTGTCAACTTTTGCATCCACCAATGCCCGCTCTACTGGGTTAAGGCACTGACGGA 24105 Query 517800 ACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAAT 517857 ||| || | ||| || || || || ||||| | ||| || | || || ||||| Sbjct 24104 ACAGATCAGCACATAGCTCCTCAAAGCGAGCTCGGG--AGATGGATGTGTAGAAGTCAAT 24047 Query 517858 TCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTC--GAAGAAGATAGTGCACGT 517915 ||||| || | ||| || |||||||| | | |||||| | ||| ||| | | Sbjct 24046 CCCTTCAAAGAGAGAGTCCACTTCAATACTTGCTTGAGTGCTGCTTGAGAGAGTTCTC-- 23989 Query 517916 TTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGAT--TCAAAT 517973 || || | ||| |||||||| |||| || | || | ||| |||| | |||| | Sbjct 23988 TTGGCTCTCTCAGCAGCTGTCCTCAGTCGACGGAGGGATCTTG--GATTTGTGGTCAAGT 23931 Query 517974 CTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTT-ACAAGACGATTATCAAAA 518032 | | ||| | || |||||||| ||| || | || ||| ||||||||||| ||||| Sbjct 23930 CCTTCTTAAACTTCCTCTTGAATTCTCCAGC-CAGGTGGTTGACAAGACGATTGTCAAAG 23872 Query 518033 TCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCA 518092 || ||||| || | | ||||| || | ||| | || | || | ||||| ||| Sbjct 23871 TCCTCACCACCAAGATGAGTATCGCCGGCCGTGGAGAGAACCTCAAACATGCCATCCTCA 23812 Query 518093 AGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATT 518152 | || || | || |||||| ||| ||||| || | ||||||||| || |||| | | Sbjct 23811 ATAGCCAGGACAGACACATCAAAGGTGCCACCTCCTAGATCAAAAATCAGAACATGCTTC 23752 Query 518153 TCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATA 518212 || | | ||||| || || || || || || || ||||| || |||||||| || Sbjct 23751 TCCCCTTGCAGCTTTTTGTCCAGTCCGTAGGCCAAGGCGGCAGCTGTGGGTTCATTGATG 23692 Query 518213 ATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAA 518272 || || | |||||| ||||||||||| ||| |||||||| || |||||||| || ||| Sbjct 23691 ATCCTGAGAACATTGAGACCAGCAATCACTCCGGCATCTTTGGTAGCTTGTCTCTGGGAA 23632 Query 518273 TCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGC 518331 || || || ||||| || ||||| || || ||||| || || | | |||| ||| || Sbjct 23631 TCATTGAAGTATGCTGGTACAGTGATGACAGCATCTGTAACCTTATGCCCAAGATATGC 23573 Score = 89.7 bits (98), Expect = 4e-12 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 518546 ATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACA 518605 || ||| |||| | ||||| ||||||||||| || || || || || || | ||| Sbjct 22935 ATAGCAACTTGGTTCTTGGCGGCATCTCCAATAAGTCTCTCCGTGTCGGTGAAGGCGACA 22876 Query 518606 TATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGC 518665 || || || || ||||| ||||| ||||| ||||| || || ||||| ||||| || Sbjct 22875 TAACTGGGTGTGGTACGATTGCCTTGTTCATTGGCAATGATCTCCACTTTGCCATTCTGG 22816 Query 518666 CATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 518712 | ||||||||||| | | || || ||||| || || || ||||| Sbjct 22815 AAGACACCTACACAGGAATACGTCGTGCCTAAGTCGATGCCGATAGC 22769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3777835921297198