Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq6568 223 4e-53 seq49 192 7e-44 seq5591 89.7 7e-13 seq11388 87.8 2e-12 >seq6568 Length=53416 Score = 223 bits (246), Expect = 4e-53 Identities = 700/1068 (66%), Gaps = 25/1068 (2%) Strand=Plus/Plus Query 6925 GGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAA 6984 |||||| | ||| || || |||| || ||||||||||||| ||||||| || | Sbjct 36460 GGTCATGACACCGCCAGCGGTCTCGATGCCGAGAGACAGAGGTGCTACGTCCACCAGGAG 36519 Query 6985 CAGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCC 7044 | |||| || ||| || ||||| || ||||| || |||||||| | || || Sbjct 36520 AACATCTTTCACCTCATCGCTCTGATCACCAGTCAAGATAGCAGCTTGGACAGCAGCACC 36579 Query 7045 GTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATC 7104 |||||| || ||||| || || || || | || |||||||| || ||||| | |||| Sbjct 36580 GTATGCCACAGCCTCGTCTGGATTGATGGACTTGTTCAGTTCCTTCCCGTTCAGGAAATC 36639 Query 7105 CGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATT 7164 | ||||| | || || || || |||| ||| || || || |||| || | | || Sbjct 36640 CTGCAACATCTTCTGGATCTTGGGAATTCTTGTGGAGCCTCCTACCATCACAACCTGATC 36699 Query 7165 CACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTT 7224 || || ||||| | ||| | || || | || || || ||| | | | || Sbjct 36700 GACCTTGTTCTTATCCAGCTTGGCATCCAACAGGGCTTGCTCTACCGGTCCAAGAGCCTT 36759 Query 7225 ACGGAACA-AGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAAT 7283 | ||| | || | || ||||| || || || || | | | | | || ||||| | Sbjct 36760 CCTGAAGAGAGAGGA-GCAAAGTTCTTCGAAGCGGGCTCTGCTGACGCTGGTGTAGAAGT 36818 Query 7284 CAACGCCGTCGTATAACGAATCAATTTCAATGGTT--GTTTGTGCCGTCGAAGATAACGT 7341 | | || || | | || |||| |||||| || | | |||| | || | ||| Sbjct 36819 CGATTCCCTCAAAGAGGGAGTCAACCTCAATGTTTGCGGTGGTGC--TGCTTGACAGCGT 36876 Query 7342 TCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAAT 7401 ||||| || |||||| ||||| || | ||| || || || | |||||| ||| || Sbjct 36877 GCGCTTGGCTCGCTCAGCAGCCGTGCGCAGACGGCGCAGAGCCCTCGGGTTGTTGGACAT 36936 Query 7402 ATCTTTCTTATGTTTACGTTTAAACTCTTCAG--AGAAG-TGTCGAAGGAGTCTCGAATC 7458 |||||||| | || | || ||||| | | ||| | | ||||| | || Sbjct 36937 GTCTTTCTTGTTCTTCCTCTTGAACTCAGCCGCCAGATGCCCTACCAGGAGATT---GTC 36993 Query 7459 GAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCC 7518 || ||||| ||||| | ||| || ||||| || || | ||| || ||||||| || | Sbjct 36994 AAAGTCTTCTCCACCAAGGTGAGTGTCCCCAGCCGTGGATTTCACCTCAAAGACTCCATC 37053 Query 7519 TTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT 7578 || || | | | || ||||| || || || || |||| ||| || ||||| ||||| Sbjct 37054 ATCGATAGTCAGGATGGACACATCGAAGGTGCCGCCTCCCATGTCGAAGATGAGCACGTT 37113 Query 7579 CGTATCGTCGTCTTTG---TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 | | || | ||| |||||||| || ||||| || | ||| || || ||||| || Sbjct 37114 C---TGTTCTCCCTTGAGCTTCTTATCAAGTCCGTAGGCAAGAGCAGCTGCTGTTGGCTC 37170 Query 7636 ATTAATAATAC-GAAGACAGTTCAGGCCAGCAATAGTTGCC-GCATCTTTCGTCGCTTGT 7693 ||| || || | || |||| ||||| || || || | ||| ||||| || || || ||| Sbjct 37171 ATTGATGATCCTGAGGACA-TTCAGTCCTGCGAT-GACGCCAGCATCCTTGGTAGCCTGT 37228 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCG 7753 | || || ||||| ||||| || || || || || || || ||| |||| |||| || Sbjct 37229 CTCTGGGAGTCGTTGAAGTACGCAGGCACGGTCACCACTGCATCCTTGACCTTCTGGCCC 37288 Query 7754 AGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCC 7813 ||||| | || || | || ||||| ||| || ||||| || ||||| || | Sbjct 37289 AGATAAGCCTCGGCTACCTCCTTCATCTTGACCAGGACCATGGAGCTGATCTCCTCTGGG 37348 Query 7814 GCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCG 7873 | ||||| ||| | || || | | || |||| | ||| || || |||| | | Sbjct 37349 GTGAACTGCTTCTTCTCTCCCATGTACTCTGCTTCCAACATCGGCTT-GCCGC--CTTTG 37405 Query 7874 GGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTT 7933 ||| || | ||| ||| | ||||| || ||||||| || |||| ||| || Sbjct 37406 TTGATCACAGTGAACGGCCAGTGCTTCATGTCAGCTTGGACGGGTGGGTCGTTAAATTTG 37465 Query 7934 CTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATG 7981 | || || || ||||| |||||||| | |||| || |||||| || Sbjct 37466 CGGCCAATCAGGCGCTTGGCATCAAAGATGCTGTTCTTCGGGTTCCTG 37513 >seq49 Length=210639 Score = 192 bits (212), Expect = 7e-44 Identities = 801/1250 (64%), Gaps = 18/1250 (1%) Strand=Plus/Minus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 |||||||| | || ||| | || |||||| |||||| | || |||||||| || || Sbjct 24765 TCATCTTCGGCCTTGTACGTCTCAGCATCTGACACCATCCTATCGATGTCTTCCTTGGAC 24706 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 || | || || || || || || || |||| | | || || | || ||||| | Sbjct 24705 AAGCGGCCTTTGTCGTTGGTGATGGTGATCTGGTTGCTCTTGCCAGTACTCTCATCTTTA 24646 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 || || || | ||||| || ||||||| || || || | ||| | ||| | Sbjct 24645 GCCGAGACGTTGAGTATACCGTTAGCATCAATGTCTAAGGAGACTTCAATCTTGGGTACA 24586 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808 || | || || | || || || | || ||||| | || || | |||| || | Sbjct 24585 CCGCGAGGAGCTGGAGGGATGCCAGCTAGCTCAAAGATGCCCAGACGATTGTTGTCTTTT 24526 Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCC 6868 | | | | ||| ||||||||||||| || || || ||||| || || || Sbjct 24525 GTCATAGCTCTTTCTCCTTCATAGACTTGGATCGTAACTGCAGGCTGGTTGTCAGCATAG 24466 Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAAT-CGTCGTATTTCTCGGAATAACCGGGGT 6927 || | ||| | | | |||| | ||| || || | | |||||| || | ||| Sbjct 24465 GTGGTGAATGTCTTGGATGTCTTGGTTGGGATGCGGC-TGTTTCTCTCGATCAGTTTGGT 24407 Query 6928 CATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCA--AGAGTAAC 6985 ||| ||||| || ||| || | ||||| || ||||| || || |||| ||| ||| Sbjct 24406 CATGATACCCCCAGCAGTCTCAATGCCAAGTGAAAGAGGAGTAACATCCACAAGAAGAAC 24347 Query 6986 AGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCG 7045 | |||| || | | || ||||| | |||||||| ||||| || | || || Sbjct 24346 A--TCTTTGACCTCTGCACTCTGGTCACCACTCAAGATGGCTGCTTGTACAGCAGCTCCA 24289 Query 7046 TATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC 7105 || || || |||||||| || || || | | | |||| ||||| ||||| | ||||| Sbjct 24288 TAAGCTACTGCCTCATCTGGATTGATGGATCTGTTCAAGTCTTTTCCGTTGAGGTAATCT 24229 Query 7106 GATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTC 7165 |||| | ||||| || ||||||||||| || || || |||| || | ||| || Sbjct 24228 TGCAACAGCTTCTGAATCTTGGGGATTCGTGTGGAGCCTCCAACCAGCACAACCTCA-TC 24170 Query 7166 ACTTTCGAT--TTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATT 7223 | | |||| || || | |||| || | || || || || | | || | Sbjct 24169 A-ATGCGATTCTTGTCAACTTTTGCATCCACCAATGCCCGCTCTACTGGGTTAAGGCACT 24111 Query 7224 TACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAAT 7283 |||||||| || ||| || |||||||| || || |||| |||||||| ||||| | Sbjct 24110 GACGGAACAGATCAGCACATAGCTCCTCAAAGCGAGCTCGGGAGATGGATGTGTAGAAGT 24051 Query 7284 CAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTT--GTGCCGTCGAAGATAACGT 7341 ||| || || | | || || | |||||| ||| || |||| | ||| | || Sbjct 24050 CAATCCCTTCAAAGAGAGAGTCCACTTCAATACTTGCTTGAGTGCTGCTTGAGAGA--GT 23993 Query 7342 TCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAAT 7401 || ||| || | |||| || || | | ||||| |||| | || || || | Sbjct 23992 TCTCTTGGCTCTCTCAGCAGCTGTCCTCAGTCGACGGAGGGATCTTGGATTTGTGGTCAA 23933 Query 7402 ATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGT-GTCGA-AGGAGTCTCGAATCG 7459 || |||||| || | || || ||| ||| | || || || | || | | || Sbjct 23932 GTCCTTCTTAAACTTCCTCTTGAATTCTCCAGCCAGGTGGTTGACAAGACGATTG--TCA 23875 Query 7460 AAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCT 7519 || || |||||||| | || ||||| || || || | || ||||| || || | Sbjct 23874 AAGTCCTCACCACCAAGATGAGTATCGCCGGCCGTGGAGAGAACCTCAAACATGCCATCC 23815 Query 7520 TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTC 7579 ||||| | | || |||||||| || ||||| || || |||||||| || || | | Sbjct 23814 TCAATAGCCAGGACAGACACATCAAAGGTGCCACCTCCTAGATCAAAAATCAGAACATGC 23755 Query 7580 GTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTA 7639 | || | | || || || || ||||| || | || || || || |||||||| Sbjct 23754 TTCTCCCCTTGCAGCTTTTTGTCCAGTCCGTAGGCCAAGGCGGCAGCTGTGGGTTCATTG 23695 Query 7640 ATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGC 7699 || || | ||| || || |||||||| | | |||||||| || ||||||| || Sbjct 23694 ATGATCCTGAGAACATTGAGACCAGCAATCACTCCGGCATCTTTGGTAGCTTGTCTCTGG 23635 Query 7700 GAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATAC 7759 ||||| || ||||| || || || || | ||| || || || || || | || ||||| Sbjct 23634 GAATCATTGAAGTATGCTGGTACAGTGATGACAGCATCTGTAACCTTATGCCCAAGATAT 23575 Query 7760 GATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 | || || | || ||||| || || ||||| || |||||||| Sbjct 23574 GCCTCGGCTGTCTCCTTCATCTTAACCAGCACCATGGAGCTGATCTCTTC 23525 >seq5591 Length=53560 Score = 89.7 bits (98), Expect = 7e-13 Identities = 131/185 (71%), Gaps = 3/185 (2%) Strand=Plus/Minus Query 7958 AAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGT 8017 || || ||||| ||||||||||||| ||||| || || ||||| ||||| ||||| Sbjct 45338 AACACCGTGTTGCTGGGGTTCATGGCCACCTGGTTTTTGGCTGCGTCTCCGATGAGACGC 45279 Query 8018 TCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCA 8077 || | | | || || || || || || || ||||| || ||||||||||| ||| Sbjct 45278 TCCGTGT---CGGTGAAGGCTACATAACTGGGCGTTGTTCGGTTGCCTTGGTCGTTGGCA 45222 Query 8078 ATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCA 8137 || || || || | ||| || | ||||| ||||| || || || || || | |||| Sbjct 45221 ATGATCTCCACTTTGCCGTGCTGGAAAACGCCCACGCAGGAGTAGGTGGTGCCAAGATCA 45162 Query 8138 ATACC 8142 ||||| Sbjct 45161 ATACC 45157 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG-ACA 7653 |||||||| |||||||| ||||| || || || || || || || || ||||| || ||| Sbjct 46880 TTCTTATCCAGACCGTAAGCGATGGCAGCTGCAGTGGGCTCGTTGATGATACGCAGGACA 46821 Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713 || || || | || | | |||||||| || ||||| || || || ||||| ||||| Sbjct 46820 -TTGAGTCCTGAGATGGCACCAGCATCTTTGGTGGCTTGGCGCTGGGAGTCGTTGAAGTA 46762 Query 7714 GGCCGGGACCGTTACGACCGCGTCCGTGAC 7743 |||||| || || | || |||| ||||| Sbjct 46761 GGCCGGTACGGTGATCACGGCGTTTGTGAC 46732 >seq11388 Length=44408 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG-ACA 7653 |||||||| |||||||| ||||| || || || || || || || || ||||| || ||| Sbjct 41185 TTCTTATCCAGACCGTAAGCGATGGCAGCTGCAGTGGGCTCGTTGATGATACGCAGGACA 41244 Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713 || || || | || | | |||||||| || ||||| || || || ||||| ||||| Sbjct 41245 -TTGAGTCCTGAGATGGCGCCAGCATCTTTGGTAGCTTGGCGCTGGGAGTCGTTGAAGTA 41303 Query 7714 GGCCGGGACCGTTACGACCGCGTCCGTGAC 7743 |||||| || || | || |||| ||||| Sbjct 41304 GGCCGGTACGGTGATCACGGCGTTTGTGAC 41333 Score = 84.2 bits (92), Expect = 3e-11 Identities = 132/186 (71%), Gaps = 5/186 (3%) Strand=Plus/Plus Query 7958 AAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGT 8017 || || ||||| ||||||||||||| |||||||| || ||||| || || ||||| Sbjct 42738 AACACCGTGTTGCTGGGGTTCATGGCCACCTGGTTCTTGGCTGCGTCTCCAATGAGACGC 42797 Query 8018 TCATTATTTTCCGTAAACGCGACGTACGATGGG-GTCGTTCGATTCCCTTGGTCGTTCGC 8076 || | | | || || || || || | |||| || || || || ||||||||||| || Sbjct 42798 TCCGTGT---CGGTGAAGGCTACATA-GCTGGGCGTGGTCCGGTTGCCTTGGTCGTTGGC 42853 Query 8077 AATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATC 8136 ||| || || || | ||| || | ||||| ||||| || || || || || | ||| Sbjct 42854 AATGATCTCCACTTTGCCGTGCTGGAAAACGCCCACGCAGGAGTAGGTGGTGCCGAGATC 42913 Query 8137 AATACC 8142 ||||| Sbjct 42914 GATACC 42919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634654997533720