Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq6406 87.8 2e-12 seq47842 82.4 9e-11 >seq6406 Length=55272 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 106507 GTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 106566 |||||| | ||| || || |||| ||| || ||| || || || | |||| ||||| Sbjct 30230 GTACTCGATAATCTCGGTGCACAGGTTACTACACTTGATGGTGCCAAGGTTCTGCTGGTT 30171 Query 106567 ACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGA 106626 |||||| ||||||| ||||| ||||| |||||||| || || || ||||| ||||| | Sbjct 30170 ACTCTTACTGTTGCAGGCATCTTTGTACAGCATGTACGGGGTACCGGTCTCTGTCTGGGC 30111 Query 106627 CTTGAGAATTGCCTTCCA 106644 || | || |||| ||| Sbjct 30110 CTGCACGATGGCCTGCCA 30093 >seq47842 Length=15337 Score = 82.4 bits (90), Expect = 9e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 106507 GTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 106566 |||||| | ||| || || |||| ||| | ||| || || || | |||| ||||| Sbjct 11517 GTACTCGATAATCTCAGTGCACAGGTTACTGCACTTGATGGTGCCAAGGTTCTGCTGGTT 11458 Query 106567 ACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGA 106626 |||||| ||||||| ||||| ||||| |||||||| || || || ||||| ||||| | Sbjct 11457 ACTCTTACTGTTGCAGGCATCTTTGTACAGCATGTACGGGGTACCGGTCTCTGTCTGGGC 11398 Query 106627 CTTGAGAATTGCCTTCCA 106644 || | || |||| ||| Sbjct 11397 CTGCACGATGGCCTGCCA 11380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589536964818920