Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq3742 150 4e-31 seq4379 141 2e-28 >seq3742 Length=77992 Score = 150 bits (166), Expect = 4e-31 Identities = 162/213 (76%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| ||||| || ||||||||||| || || ||||| || | || || | |||||||| Sbjct 33457 AACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTC 33398 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || |||||||| || || || |||||||| || ||||| ||||||||||| Sbjct 33397 CAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTG 33338 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGT 195107 || || |||||| ||||| |||||||| ||| || || |||||||| | || Sbjct 33337 GATCTTGGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCGACCTCAAGGGTGATGGT 33281 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||||||| || || ||||| | ||||| Sbjct 33280 TTTGCCTGTCAAGGTCTTGACGAAGATCTGCAT 33248 Score = 141 bits (156), Expect = 2e-28 Identities = 160/213 (75%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||| || ||||||||||| || || ||||| || | || || | |||||||| Sbjct 33229 AACCAAGTGGAGTGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTC 33170 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || |||||||| || || || |||||||| || ||||| ||||||||||| Sbjct 33169 CAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTG 33110 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGT 195107 ||||| ||||| ||||| |||||||| ||| || || ||||| || | || Sbjct 33109 GATTTTGGCTTTGACATTCTCGATGGTGTC---ACTGGGCTCGACCTCAAGAGTGATGGT 33053 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| ||||||| || || ||||| | ||||| Sbjct 33052 CTTACCTGTCAGGGTCTTGACGAAGATCTGCAT 33020 Score = 131 bits (144), Expect = 4e-25 Identities = 163/221 (74%), Gaps = 7/221 (3%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||| || ||||||||||| || || ||||| || | || || | |||||||| Sbjct 33001 AACCAAGTGGAGTGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTC 32942 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || || ||||| || || || |||||||| || ||||| ||||||||||| Sbjct 32941 CAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTG 32882 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGT 195107 || || ||||| ||||| |||||||| ||| || || || || || | || Sbjct 32881 GATCTTGGCTTTGACATTCTCGATGGTGTC---ACTGGGCTCGACCTCGAGAGTGATGGT 32825 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCATTTATGGTT 195148 ||| ||||||| || || ||||| | ||||| | ||||| Sbjct 32824 CTTGCCTGTCAGGGTCTTGACGAAGATCTGCATCT-TGGTT 32785 >seq4379 Length=69586 Score = 141 bits (156), Expect = 2e-28 Identities = 160/213 (75%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||| || ||||||||||| || || ||||| || | || || | |||||||| Sbjct 39080 AACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTC 39139 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || |||||||| || || || |||||||| || ||||| ||||||||||| Sbjct 39140 CAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTG 39199 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGT 195107 || || |||||| ||||| |||||||| ||| || || ||||| || | || Sbjct 39200 GATCTTGGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCGACCTCAAGAGTGATGGT 39256 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| ||||||| || || ||||| | ||||| Sbjct 39257 CTTGCCTGTCAGGGTCTTGACGAAGATCTGCAT 39289 Score = 140 bits (154), Expect = 7e-28 Identities = 165/221 (75%), Gaps = 7/221 (3%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||| || ||||||||||| || || ||||| || | || || | |||||||| Sbjct 49715 AACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTC 49774 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || |||||||| || || || |||||||| || ||||| ||||||||||| Sbjct 49775 CAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTG 49834 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGT 195107 || || ||||| ||||| |||||||| ||| || || ||||| || | || Sbjct 49835 GATCTTGGCTTTGACATTCTCGATGGTGTC---ACTGGGCTCGACCTCAAGAGTGATGGT 49891 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCATTTATGGTT 195148 ||| ||||||| || || ||||| | ||||| | ||||| Sbjct 49892 CTTGCCTGTCAGGGTCTTGACGAAGATCTGCATCT-TGGTT 49931 Score = 134 bits (148), Expect = 3e-26 Identities = 150/199 (75%), Gaps = 6/199 (3%) Strand=Plus/Plus Query 194945 TGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTG 195004 |||||||||| || || ||||| || | || || | |||||||| |||||||| || | Sbjct 39650 TGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGG 39709 Query 195005 CGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGA 195064 ||||||| || || || |||||||| || ||||| ||||||||||| || || |||| Sbjct 39710 CGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGATCTTGGCTTTGA 39769 Query 195065 CGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAG 195121 | ||||| |||||||| |||| || || ||||| |||| ||||| || |||| | Sbjct 39770 CATTCTCGATGGTGTC---ACTTGGCTCGACCTCAAGAGTAATGGTCTTACCCGTCAGGG 39826 Query 195122 TTTTTACGAACACTTGCAT 195140 | || ||||| | ||||| Sbjct 39827 TCTTGACGAAGATCTGCAT 39845 Score = 134 bits (148), Expect = 3e-26 Identities = 164/221 (74%), Gaps = 7/221 (3%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||| || ||||||||||| || || ||||| || | || || | |||||||| Sbjct 40092 AACCAAGTGGAGTGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTC 40151 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || |||||||| || || || |||||||| || ||||| ||||||||||| Sbjct 40152 CAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTG 40211 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGT 195107 || || ||||| ||||| |||||||| ||| || || || || || | || Sbjct 40212 GATCTTGGCTTTGACATTCTCGATGGTGTC---ACTGGGCTCGACCTCGAGAGTGATGGT 40268 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCATTTATGGTT 195148 ||| ||||||| || || ||||| | ||||| | ||||| Sbjct 40269 CTTGCCTGTCAGGGTCTTGACGAAGATCTGCATCT-TGGTT 40308 Score = 129 bits (142), Expect = 1e-24 Identities = 157/213 (74%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||| || ||||||||||| || || ||||| || | || || | |||||||| Sbjct 39864 AACCAAGTGGAGTGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTC 39923 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||| | | || || || || | || |||||||| || ||||| || |||||||| Sbjct 39924 CAGCTGCATTACGGCAAAAATCAGATGCTGCTGGTCTGGTGGGATGCCCTCGTTGTCTTG 39983 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGT 195107 || || |||||| |||| |||||||| |||| || || |||||||||| || Sbjct 39984 GATCTTGGCCTTGACATTCTTGATGGTGTC---ACTTGGCTCGACCTCAAGGGTAATGGT 40040 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || ||||| || || ||||| | |||||| Sbjct 40041 CTTACCCGTCAAGGTCTTGACGAAGATTTGCAT 40073 Score = 127 bits (140), Expect = 5e-24 Identities = 118/150 (79%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||| || ||||||||||| || || ||||| || | || || | |||||||| Sbjct 39450 AACCAAGTGGAGTGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTC 39509 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || |||||||| || || || |||||||| || ||||| ||||||||||| Sbjct 39510 CAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTG 39569 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 || || |||||| ||||| |||||||| Sbjct 39570 GATCTTGGCCTTGACATTCTCGATGGTGTC 39599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108626084632361