Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq3742 136 3e-27 seq4379 131 1e-25 >seq3742 Length=77992 Score = 136 bits (150), Expect = 3e-27 Identities = 162/218 (74%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||| | |||| |||||||| ||||| ||||| || ||| | || |||| || Sbjct 33001 AACCAAGTGGAGTGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTC 32942 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||| ||||||||||| || || || ||||||||| | || | ||||| ||||| Sbjct 32941 CAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTG 32882 Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 ||||| |||||| || || || | |||| || ||| || |||| || ||||| Sbjct 32881 GATCTTGGCTTTGAC--ATTCTCGATGGTGTCACTGGGCTCGACCTCGAGAGTGATGGTC 32824 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATATTCGT 34987 || || || || ||||| || ||||||||||| || || Sbjct 32823 TTGCCTGTCAGGGTCTTGACGAAGATCTGCATCTTGGT 32786 Score = 122 bits (134), Expect = 6e-23 Identities = 156/213 (73%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||| | |||| |||||||| ||||| ||||| || ||| | || |||| || Sbjct 33229 AACCAAGTGGAGTGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTC 33170 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||| |||||||| || || || || ||||||||| | || | ||||| ||||| Sbjct 33169 CAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTG 33110 Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 || || |||||| || || || | |||| || ||| || || | || ||||| Sbjct 33109 GATTTTGGCTTTGAC--ATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTC 33052 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || || ||||| || |||||||||||| Sbjct 33051 TTACCTGTCAGGGTCTTGACGAAGATCTGCATA 33019 Score = 118 bits (130), Expect = 7e-22 Identities = 155/213 (73%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||| ||| | ||| |||||||| ||||| ||||| || ||| | || |||| || Sbjct 33457 AACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTC 33398 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||| |||||||| || || || || ||||||||| | || | ||||| ||||| Sbjct 33397 CAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTG 33338 Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 ||||| ||||| || || || | |||| || ||| || || | ||| |||||| Sbjct 33337 GATCTTGGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTT 33280 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || | ||||| || |||||||||||| Sbjct 33279 TTGCCTGTCAAGGTCTTGACGAAGATCTGCATA 33247 >seq4379 Length=69586 Score = 131 bits (144), Expect = 1e-25 Identities = 161/218 (74%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||| | |||| |||||||| ||||| ||||| || ||| | || |||| || Sbjct 40092 AACCAAGTGGAGTGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTC 40151 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||| |||||||| || || || || ||||||||| | || | ||||| ||||| Sbjct 40152 CAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTG 40211 Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 ||||| |||||| || || || | |||| || ||| || |||| || ||||| Sbjct 40212 GATCTTGGCTTTGAC--ATTCTCGATGGTGTCACTGGGCTCGACCTCGAGAGTGATGGTC 40269 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATATTCGT 34987 || || || || ||||| || ||||||||||| || || Sbjct 40270 TTGCCTGTCAGGGTCTTGACGAAGATCTGCATCTTGGT 40307 Score = 118 bits (130), Expect = 7e-22 Identities = 155/213 (73%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||| | ||| |||||||| ||||| ||||| || ||| | || |||| || Sbjct 39080 AACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTC 39139 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||| |||||||| || || || || ||||||||| | || | ||||| ||||| Sbjct 39140 CAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTG 39199 Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 ||||| ||||| || || || | |||| || ||| || || | || ||||| Sbjct 39200 GATCTTGGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTC 39257 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || || ||||| || |||||||||||| Sbjct 39258 TTGCCTGTCAGGGTCTTGACGAAGATCTGCATA 39290 Score = 118 bits (130), Expect = 7e-22 Identities = 158/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||| | ||| |||||||| ||||| ||||| || ||| | || |||| || Sbjct 49715 AACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTC 49774 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||| ||||| || || || || || ||||||||| | || | ||||| ||||| Sbjct 49775 CAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTG 49834 Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 ||||| |||||| || || || | |||| || ||| || || | || ||||| Sbjct 49835 GATCTTGGCTTTGAC--ATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTC 49892 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATATTCGT 34987 || || || || ||||| || ||||||||||| || || Sbjct 49893 TTGCCTGTCAGGGTCTTGACGAAGATCTGCATCTTGGT 49930 Score = 114 bits (126), Expect = 8e-21 Identities = 143/194 (74%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| || ||| | || |||| |||||||| |||||||| || Sbjct 39655 TCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCGAAG 39714 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||||||| | || | ||||| ||||| ||||| |||||| || Sbjct 39715 ATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGATCTTGGCTTTGAC--AT 39772 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| | ||| || || | || ||||| || ||||| || ||||| | Sbjct 39773 TCTCGATGGTGTCACTTGGCTCGACCTCAAGAGTAATGGTCTTACCCGTCAGGGTCTTGA 39832 Query 34969 CAAAGATCTGCATA 34982 | |||||||||||| Sbjct 39833 CGAAGATCTGCATA 39846 Score = 95.1 bits (104), Expect = 8e-15 Identities = 150/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 |||||| || | ||| ||| ||| ||||| ||||| || ||| | || |||| || Sbjct 49487 AACCAACTGGAGGGTGAACTCTCTCTTGATGTTGTAGTCAGACAGGGTGCGGCCATCTTC 49546 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||| || ||||||| || || | ||||||||| | || | ||||| ||||| Sbjct 49547 CAGCTGCATTACGGCAAAAATCAGATGCTGCTGGTCTGGTGGGATGCCCTCGTTGTCTTG 49606 Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 ||||| ||||| || || || | |||| | ||| || || | ||| ||||| Sbjct 49607 GATCTTGGCCTTGAC--ATTCTTGATGGTGTCACTTGGCTCGACCTCAAGGGTAATGGTC 49664 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || ||||| | ||||| || |||||||||||| Sbjct 49665 TTACCCGTCAAGGTCTTGACGAAGATCTGCATA 49697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324395487645624