Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2645 104 3e-17 seq503 100 3e-16 >seq2645 Length=46952 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 19047 CCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAAC 19106 ||| ||||||| ||||||||||| || ||||| || ||||| ||||| || || ||||| Sbjct 14796 CCAAAATATAGCTGCAAATGATCCCGAGAAGAAGATGCCTTCCACTGCAGCGAATGCAAC 14737 Query 19107 TAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTT 19166 ||||| |||||| | |||| || || |||||||||| | ||||| ||||| || Sbjct 14736 GAGTCTCTCTCCAAATGTAGCTTCCTTGGCATGAATCCATCGAATGGCCCAGTCAGCTTT 14677 Query 19167 CTTTTTTACACATGGCA 19183 ||| || | ||||||| Sbjct 14676 CTTCTTGATGCATGGCA 14660 >seq503 Length=134583 Score = 100 bits (110), Expect = 3e-16 Identities = 154/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| || | || |||| ||||||||||| || || |||||||||| || | ||||| Sbjct 10719 CCTCATCGCGGCTAATCAGCTCATTAGAAAACGTCAAGCCAGGCATCAACCCACGTTTTT 10778 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||| || || || || || ||||| || ||||| || || || || || ||||| | Sbjct 10779 TCAGCCAAAAGATGGAGGCGAAAGATCCCGAGAAGAAAATCCCCTCCACCGCGGCAAAGG 10838 Query 19103 CAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAG 19162 | || | ||| || || || | | | || |||||| || || ||||| |||| Sbjct 10839 CCACGACTCTCTCACCGTAGGTGGACGTTTCCGAATTAATCCAGTTTAGCGCCCAGTCAG 10898 Query 19163 CCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAA 19202 |||| | ||| || || || | ||||| || | ||||| Sbjct 10899 CCTTTTGTTTGACGCAAGGTAGCGTCTCAATGGCGTTAAA 10938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561685932576120