Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq49 161 8e-34 seq6568 98.7 8e-15 seq11388 89.7 4e-12 seq5591 86.0 5e-11 >seq49 Length=210639 Score = 161 bits (178), Expect = 8e-34 Identities = 449/682 (66%), Gaps = 10/682 (1%) Strand=Plus/Plus Query 551898 CTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAA 551957 || ||||| || || || ||| || |||||||| || |||| ||| | |||||| Sbjct 23954 CTCCGTCGACTGAGGACAGCTGCTGAGAGAGCCAAGAGAACTCTCTCAAGCAGCACTCAA 24013 Query 551958 ACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGG 552017 | | ||||||||| || || | ||||| || ||||| | | || | || || | Sbjct 24014 GCAAGTATTGAAGTGGACTCTCTCTTTGAAGGGATTGACTTCTACACATCCATCTCCCGA 24073 Query 552018 GCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAA 552077 || ||||| || | ||| ||||||| || | | || | |||||||| | Sbjct 24074 GCTCGCTTTGAGGAGCTATGTGCTGATCTGTTCCGTCAGTGCCTTAACCCAGTAGAGCGG 24133 Query 552078 GTTTTAAGAGATTCAAAGATTGATAA--ATCCAAAGTACATGAAATTGTGCTTGTTGGTG 552135 | || ||| |||| |||| || ||| | | |||| ||||||| ||||| | Sbjct 24134 GCATTGGTGGATGCAAAAGTTGACAAGAATCGCA--TTGATGAGGTTGTGCTGGTTGGAG 24191 Query 552136 GATCTACAAGAATTCCTAAAATTCGCGAAATGTT--AAGTTCTTATTTCAATGGTAAAAA 552193 | || ||| |||| || || |||| | |||| ||| | || |||| || ||| | Sbjct 24192 GCTCCACACGAATCCCCAAGATTCAGAAGCTGTTGCAAGAT--TACCTCAACGGAAAAGA 24249 Query 552194 ATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGC 552253 || || | | |||||||||||||| || || ||||| || || | |||||||| Sbjct 24250 CTTGAACAGATCCATCAATCCAGATGAGGCAGTAGCTTATGGAGCTGCTGTACAAGCAGC 24309 Query 552254 TATTCTTTCTGGACAAACTGA-TGAAAAACTACAAAATATTGTACTTGTAGATGTTACTC 552312 || | ||| | | || || | | | || || || | ||||| |||||||||| Sbjct 24310 CATCTTGAGTGGTGAC-CAGAGTGCAGAGGTCAAAGATGTTCTTCTTGTGGATGTTACTC 24368 Query 552313 CTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATA 552372 |||| || ||||| | || || | ||| ||||| ||||| || || ||||| ||||| | Sbjct 24369 CTCTTTCACTTGGCATTGAGACTGCTGGGGGTATCATGACCAAACTGATCGAGAGAAACA 24428 Query 552373 CTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTG 552432 || || || | ||| ||| | || ||| | || || || |||| | Sbjct 24429 GCCGCATCCCAACCAAGACATCCAAGACATTCACCACCTATGCTGACAACCAGCCTGCAG 24488 Query 552433 TTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTA 552492 |||| || ||| | | ||||||||||||| | || ||||| || |||| || || | Sbjct 24489 TTACGATCCAAGTCTATGAAGGAGAAAGAGCTATGACAAAAGACAACAATCGTCTGGGCA 24548 Query 552493 CTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTT 552552 ||| | ||| || || ||||| |||||||| || ||||| | |||||||| | | Sbjct 24549 TCTTTGAGCTAGCTGGCATCCCTCCAGCTCCTCGCGGTGTACCCAAGATTGAAGTCTCCT 24608 Query 552553 TCGATATCGATGCCAATGGAAT 552574 | || || ||||| || || || Sbjct 24609 TAGACATTGATGCTAACGGTAT 24630 Score = 136 bits (150), Expect = 3e-26 Identities = 257/372 (69%), Gaps = 6/372 (2%) Strand=Plus/Plus Query 550169 AATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAG 550228 || || || ||||||||||||||| | ||||| | | ||| ||||| | | || || Sbjct 23369 AACACAATCTTTGATGCTAAACGTCTGATTGGCCGTCGGTTTGATGATGCATCGGTCCAA 23428 Query 550229 GCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTG-A 550287 ||||||||||| || ||||| ||| | | | || || | || || || | Sbjct 23429 GCAGATATGAAACACTGGCCCTTCAAGGTGATCAACAAACAAGGGATGCCC-ATGCTGCA 23487 Query 550288 AGCT-ACT-CATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTT 550345 ||| | | |||||| || | ||| || | |||||| | || || ||||| Sbjct 23488 AGCCGAGTACATGAATGAG--GCTAAGACCTTCCCTCCAGAAGAGATCAGCTCCATGGTG 23545 Query 550346 TTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTA 550405 | | || ||||| | |||||| || | | |||| || | ||||| ||||| || Sbjct 23546 CTGGTTAAGATGAAGGAGACAGCCGAGGCATATCTTGGGCATAAGGTTACAGATGCTGTC 23605 Query 550406 ATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGT 550465 || |||||||||||||| || ||||| || || | |||||||| |||||||| ||| Sbjct 23606 ATCACTGTACCAGCATACTTCAATGATTCCCAGAGACAAGCTACCAAAGATGCCGGAGTG 23665 Query 550466 ATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATAT 550525 |||||||| || |||||||| | || ||||||||||| || ||||| || | || || Sbjct 23666 ATTGCTGGTCTCAATGTTCTCAGGATCATCAATGAACCCACAGCTGCCGCCTTGGCCTAC 23725 Query 550526 GGACTTGATAAA 550537 ||||| || ||| Sbjct 23726 GGACTGGACAAA 23737 >seq6568 Length=53416 Score = 98.7 bits (108), Expect = 8e-15 Identities = 119/158 (75%), Gaps = 3/158 (2%) Strand=Plus/Minus Query 550381 TGGTCAAGAAGTT-ACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAAC 550439 ||| | ||||| | | ||||||||| | || || || || || || || ||||| || Sbjct 37289 TGGGCCAGAAGGTCAAGGATGCAGTGGTGACCGTGCCTGCGTACTTCAACGACTCCCAGA 37230 Query 550440 GTCAAGCTACTAAAGATGCTGGACGT-ATTGCTGGACTTAATGTTCTTCGTATTATCAAT 550498 | || ||||| || |||||||| ||| || || ||||| ||||| || | || |||||| Sbjct 37229 GACAGGCTACCAAGGATGCTGG-CGTCATCGCAGGACTGAATGTCCTCAGGATCATCAAT 37171 Query 550499 GAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 || || || || ||||| ||||| || ||||||||||| Sbjct 37170 GAGCCAACAGCAGCTGCTCTTGCCTACGGACTTGATAA 37133 >seq11388 Length=44408 Score = 89.7 bits (98), Expect = 4e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || || ||||| || || || || ||||| || || |||||||| ||||||||| Sbjct 41324 GCCGTGATCACCGTACCGGCCTACTTCAACGACTCCCAGCGCCAAGCTACCAAAGATGCT 41265 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || || | ||||| ||||| || ||||| ||||| || || ||||| ||||| | Sbjct 41264 GGCGCCATCTCAGGACTCAATGTCCTGCGTATCATCAACGAGCCCACTGCAGCTGCCATC 41205 Query 550520 GCATATGGACTTGATAA 550536 || || || || ||||| Sbjct 41204 GCTTACGGTCTGGATAA 41188 >seq5591 Length=53560 Score = 86.0 bits (94), Expect = 5e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || || ||||| || || || || ||||| || || ||||| || ||||||||| Sbjct 46741 GCCGTGATCACCGTACCGGCCTACTTCAACGACTCCCAGCGCCAAGCCACCAAAGATGCT 46800 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || || | ||||| ||||| || ||||| ||||| || || ||||| ||||| | Sbjct 46801 GGTGCCATCTCAGGACTCAATGTCCTGCGTATCATCAACGAGCCCACTGCAGCTGCCATC 46860 Query 550520 GCATATGGACTTGATAA 550536 || || || || ||||| Sbjct 46861 GCTTACGGTCTGGATAA 46877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4026113251534670