Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq8469 123 5e-23 seq937 123 5e-23 seq47842 116 7e-21 seq6406 116 7e-21 seq2645 111 3e-19 seq503 89.7 1e-12 >seq8469 Length=53876 Score = 123 bits (136), Expect = 5e-23 Identities = 188/268 (70%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 48424 GTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTC 48483 ||||||||| ||||| | ||||| || ||||||||||||||||||||| || ||||| Sbjct 18818 GTACATCTCGGAGTGAATGTTCTCGATGGCGATCTGGAACCCGTAGAAGCACCGCGCCTC 18877 Query 48484 AAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGA 48543 |||||| || || | ||| | ||||| || ||||| || || || || || Sbjct 18878 GGGCACCTGAACCTCCTGGCTGAACCGCTCCACGAGGTTCTCGTTCACGATGCCGTCGCT 18937 Query 48544 AGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATT 48603 || || ||||| || | ||| || | ||| || | ||||| | |||| | | Sbjct 18938 GGCGGCGAAGAACGCCAAGACGTGGGAGATGAAGTGCCTCTCGTCCGGCTTGAGGGACTC 18997 Query 48604 CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGC 48663 |||| | | | ||| ||| ||||| || || || || |||||||| ||||| ||| Sbjct 18998 CCAGTCTGGGAGGTCCTTGGAGAGGTCGACCTCCTCGACCGTCCAGAACGACGCCTCTGC 19057 Query 48664 TTTTTTGTACATGCCCCATATGTCCGGA 48691 || ||||||||| |||| |||||| || Sbjct 19058 CTTCTTGTACATGTCCCAGATGTCCTGA 19085 Score = 109 bits (120), Expect = 1e-18 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 || || || ||||| ||| | |||||||| | || |||| | ||||||| || Sbjct 17886 TCATCGCGACTGATCAGCTCATTGGAGAACGTCAAGCCGTGCATCAGTCCCCTCTTCTTC 17945 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCG 48274 |||||||| || | ||||| || || |||||||| ||||||||||| || ||||| || Sbjct 17946 AGCCAGAAGATGGAGGCGAAGGACCCCGAGAAGAAAATGCCCTCCACAGCAGCGAAGGCC 18005 Query 48275 GTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGA---GATCCAGGAAAGCGCCCAGTCT 48331 | |||||| ||| | | | | |||| || ||||||| ||||||||||| Sbjct 18006 ACAACCCTCTCGCCG---TAGGTGGGCATGTCCGAGTTGATCCAGTTCAGCGCCCAGTCA 18062 Query 48332 GCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366 ||||||| ||||| ||| || | ||||| ||||| Sbjct 18063 GCCTTCTGCTTGACGCAAGGTAGGGTCTCAATGGC 18097 >seq937 Length=97168 Score = 123 bits (136), Expect = 5e-23 Identities = 188/268 (70%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 48424 GTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTC 48483 ||||||||| ||||| | ||||| || ||||||||||||||||||||| || ||||| Sbjct 94024 GTACATCTCTGAGTGAATGTTCTCGATGGCGATCTGGAACCCGTAGAAGCACCGCGCCTC 94083 Query 48484 AAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGA 48543 |||||| || || | ||| | ||||| || ||||| || || || || || Sbjct 94084 CGGCACCTGAACCTCCTGGCTGAACCGCTCCACGAGGTTCTCGTTCACGATGCCGTCGCT 94143 Query 48544 AGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATT 48603 || || |||||||| | ||| || | ||| || | ||| | | |||| | | Sbjct 94144 GGCGGCGAAGAAGGCCAAGACGTGGGAGATGAAGTGCCTCTCATCCGGCTTGAGGGACTC 94203 Query 48604 CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGC 48663 |||| | | | ||| ||| ||||| || || || || |||||||| ||||| ||| Sbjct 94204 CCAGTCTGGGAGGTCCTTGGAGAGGTCGACCTCCTCGACCGTCCAGAACGACGCCTCTGC 94263 Query 48664 TTTTTTGTACATGCCCCATATGTCCGGA 48691 || ||||||||| |||| |||||| || Sbjct 94264 CTTCTTGTACATGTCCCAGATGTCCTGA 94291 Score = 114 bits (126), Expect = 2e-20 Identities = 155/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 || || || ||||| ||| | |||||||| | || |||| | ||||||| || Sbjct 93300 TCATCGCGACTGATCAGCTCATTGGAGAACGTCAAGCCGTGCATCAGTCCCCTCTTCTTC 93359 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCG 48274 |||||||| || | ||||| ||||| |||||||| ||||||||||| || ||||| || Sbjct 93360 AGCCAGAAGATGGAGGCGAAGGAGCCCGAGAAGAAAATGCCCTCCACAGCAGCGAAGGCC 93419 Query 48275 GTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGA---GATCCAGGAAAGCGCCCAGTCT 48331 | |||||| ||| | | | | |||| || ||||||| ||||||||||| Sbjct 93420 ACAACCCTCTCGCCG---TAGGTGGACATGTCCGAGTTGATCCAGTTCAGCGCCCAGTCA 93476 Query 48332 GCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366 ||||||| ||||| ||| || | ||||| ||||| Sbjct 93477 GCCTTCTGCTTGACGCAAGGTAGGGTCTCAATGGC 93511 >seq47842 Length=15337 Score = 116 bits (128), Expect = 7e-21 Identities = 149/206 (72%), Gaps = 12/206 (6%) Strand=Plus/Minus Query 213141 CCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCG 213200 ||||||||| | |||| ||||| ||||| || || |||||||||||||| |||||| Sbjct 12947 CCTTTGCTCGCCGGGCAGCCCTCGTAAGTCTCATATGGTCCATGCTCCTTGGCGAGCTCG 12888 Query 213201 CAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTG 213260 ||| || | || || |||||||||||||| ||||| |||| |||| ||||||| | Sbjct 12887 CAGCTTGCTTTGAGAGCTGCGTAGTAGATGGTCTCAAAGATCTGGATGTTCAGCTTCTGG 12828 Query 213261 GCCTCTGG------GGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCC 213314 || || || | | | |||| ||||| | || ||| | || || || ||| Sbjct 12827 GCTTCGGGGCTTTCGAAGGGGAAGCGCATCTTGAT------GAAAGCGTCGGCTAGGCCC 12774 Query 213315 TGGACCCCGATGCCGATGGGTCTGTG 213340 || || |||||||||||||| | ||| Sbjct 12773 TGCACACCGATGCCGATGGGCCGGTG 12748 Score = 100 bits (110), Expect = 5e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 212915 TATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGAT 212974 || |||||| ||||| || |||||||| | ||| | ||| ||||| ||||| || Sbjct 14191 TACCTGGAATTCACCAGACAGCACCCTGCGAGTGTAGATGTTGCTGGTGTATGGCTCAAT 14132 Query 212975 GCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAG 213034 | |||||| || ||||| ||||| || ||| ||| ||||||||||| |||| ||| || Sbjct 14131 GGACTCGTTATTGCCCAGGATCTGAGCCGTGGAGGCGGTGGGCATGGGGGCCAGCAGAAG 14072 Query 213035 ACTGTTCCTCACTCCGTGCTCGCCGATG 213062 ||||||||| | |||| || | | ||| Sbjct 14071 ACTGTTCCTGAGCCCGTACTTGGCAATG 14044 Score = 98.7 bits (108), Expect = 2e-15 Identities = 117/156 (75%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 213530 GTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTT 213589 |||||| || ||||| ||||||||||| ||||| ||||||||| |||||||| ||||| Sbjct 11517 GTACTCGATAATCTCAGTGCACAGGTTACTGCACTTGATGGTGCCAAGGTTCTGCTGGTT 11458 Query 213590 TGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGA 213649 ||| |||| | ||| ||||| |||||||| |||| ||||||||| ||||| Sbjct 11457 ACTCTTACTGTTGCAGGCATCTTTGTACAGCATGTACGGGGTACCGGTCTCTGTCTGGGC 11398 Query 213650 CACCAGTATCTGGCT-CCAGAGGTACCTGGCCTTGA 213684 | || || | || |||||| ||| ||||||| Sbjct 11397 CTGCACGAT-GGCCTGCCAGAGATACTGAGCCTTGA 11363 Score = 89.7 bits (98), Expect = 1e-12 Identities = 132/182 (73%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 213779 GGGACACATGAGGCTCCAGTCCCCGT-CATCTCTGACTCTCTGCATGAACAGGTCCGGGA 213837 ||| ||||| |||| |||||| || | ||| || | | |||||||||||| || | Sbjct 10538 GGGGCACATCAGGCACCAGTCTTGGTTCCCCTCC-ACGCGCCTCATGAACAGGTCTGGTA 10480 Query 213838 CCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGC-GC 213896 ||| || || ||| ||||| | || || | ||| ||| || ||| || || Sbjct 10479 TCCAGAGTCCGTAGAAGAGGTCGCGGGCCCGCTGCTCCTCCTTGCCGTGGTTCTTCTTGC 10420 Query 213897 AGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCC 213956 || || || || ||||||||||| |||||||| ||||||| ||||||||||||||| || Sbjct 10419 AG-TCCAGGAAATCAAAGATGTCGGCGTGCCAGGGCTCCAGGTAGATGGCAAAGGCACCG 10361 Query 213957 GG 213958 || Sbjct 10360 GG 10359 >seq6406 Length=55272 Score = 116 bits (128), Expect = 7e-21 Identities = 148/202 (73%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 213141 CCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCG 213200 ||||||||| | |||| ||||| ||||| || || |||||||||||||| ||||| Sbjct 31840 CCTTTGCTCGCCGGGCAGCCCTCGTAAGTCTCATATGGTCCATGCTCCTTGGCGAGCTCA 31781 Query 213201 CAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTG 213260 ||| || | || || |||||||||||||| ||||| |||| |||| ||||||| | Sbjct 31780 CAGCTTGCTTTGAGAGCTGCGTAGTAGATGGTCTCAAAGATCTGGATGTTCAGCTTCTGG 31721 Query 213261 GCCTCTGGGGACGTGAAGGGCATCATCATGCGTTG--GAACACATCAGCCAGCCCCTGGA 213318 |||| ||| | |||||| | ||| ||| ||| | || || || ||||| | Sbjct 31720 GCCTGAGGGCTCTCGAAGGGGAAGCGCAT--CTTGATGAAAGCGTCGGCTAGGCCCTGCA 31663 Query 213319 CCCCGATGCCGATGGGTCTGTG 213340 | |||||||||||||| | ||| Sbjct 31662 CGCCGATGCCGATGGGCCGGTG 31641 Score = 105 bits (116), Expect = 1e-17 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 212915 TATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGAT 212974 || |||||| ||||| || |||||||| | ||| | ||| ||||| ||||| || Sbjct 33214 TACCTGGAATTCACCAGACAGCACCCTGCGAGTGTAGATGTTGCTGGTGTACGGCTCAAT 33155 Query 212975 GCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAG 213034 | ||||||||| ||||| ||||| || ||| ||| || |||||||| |||| |||||| Sbjct 33154 GGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCGGTAGGCATGGGGGCCAGCAGGAG 33095 Query 213035 ACTGTTCCTCACTCCGTGCTCGCCGATG 213062 ||||||||| | |||| || | | ||| Sbjct 33094 ACTGTTCCTGAGCCCGTACTTGGCAATG 33067 Score = 98.7 bits (108), Expect = 2e-15 Identities = 117/156 (75%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 213530 GTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTT 213589 |||||| || ||||||||||||||||| || || ||||||||| |||||||| ||||| Sbjct 30230 GTACTCGATAATCTCGGTGCACAGGTTACTACACTTGATGGTGCCAAGGTTCTGCTGGTT 30171 Query 213590 TGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGA 213649 ||| |||| | ||| ||||| |||||||| |||| ||||||||| ||||| Sbjct 30170 ACTCTTACTGTTGCAGGCATCTTTGTACAGCATGTACGGGGTACCGGTCTCTGTCTGGGC 30111 Query 213650 CACCAGTATCTGGCT-CCAGAGGTACCTGGCCTTGA 213684 | || || | || |||||| ||| ||||||| Sbjct 30110 CTGCACGAT-GGCCTGCCAGAGATACTGAGCCTTGA 30076 Score = 89.7 bits (98), Expect = 1e-12 Identities = 132/182 (73%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 213779 GGGACACATGAGGCTCCAGTCCCCGT-CATCTCTGACTCTCTGCATGAACAGGTCCGGGA 213837 ||| ||||| |||| |||||| || | ||| || | | |||||||||||| || | Sbjct 29255 GGGGCACATCAGGCACCAGTCTTGGTTCCCCTCC-ACGCGCCTCATGAACAGGTCTGGTA 29197 Query 213838 CCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGC-GC 213896 ||| || || ||| ||||| | || || | ||| ||| || ||| || || Sbjct 29196 TCCAGAGTCCGTAGAAGAGGTCGCGGGCCCGCTGCTCCTCCTTGCCGTGGTTCTTCTTGC 29137 Query 213897 AGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCC 213956 || || || || ||||||||||| |||||||| ||||||| ||||||||||||||| || Sbjct 29136 AG-TCCAGGAAATCAAAGATGTCGGCGTGCCAGGGCTCCAGGTAGATGGCAAAGGCACCG 29078 Query 213957 GG 213958 || Sbjct 29077 GG 29076 >seq2645 Length=46952 Score = 111 bits (122), Expect = 3e-19 Identities = 110/140 (79%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCG 48274 ||||| || || || || || || || |||||||||||||| |||||||| ||||| || Sbjct 14798 AGCCAAAATATAGCTGCAAATGATCCCGAGAAGAAGATGCCTTCCACTGCAGCGAATGCA 14739 Query 48275 GTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTC-TGAGATCCAGGAAAGCGCCCAGTCTGC 48333 ||| |||||||| || | ||| | |||| | ||| ||||| || |||||||| || Sbjct 14738 ACGAGTCTCTCTCCAAATGTAGCTTCCTTGGCATGA-ATCCATCGAATGGCCCAGTCAGC 14680 Query 48334 CTTCTTCTTGATGCATGGCA 48353 ||||||||||||||||||| Sbjct 14679 TTTCTTCTTGATGCATGGCA 14660 >seq503 Length=134583 Score = 89.7 bits (98), Expect = 1e-12 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 || || ||||| || ||| | || || || | |||||||| | ||| | | ||| Sbjct 10721 TCATCGCGGCTAATCAGCTCATTAGAAAACGTCAAGCCAGGCATCAACCCACGTTTTTTC 10780 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCG 48274 ||||| || || | |||||||| || |||||||| || |||||||| || || || || Sbjct 10781 AGCCAAAAGATGGAGGCGAAAGATCCCGAGAAGAAAATCCCCTCCACCGCGGCAAAGGCC 10840 Query 48275 GTGAGCCTCTCTCCGAAAGAAG-CGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGC 48333 || ||||| ||| | | | |||| | | | |||||| ||||||||||| || Sbjct 10841 ACGACTCTCTCACCGTAGGTGGACGTTTCCGAATTA-ATCCAGTTTAGCGCCCAGTCAGC 10899 Query 48334 CTTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366 ||| | |||| ||| || | |||||| ||||| Sbjct 10900 CTTTTGTTTGACGCAAGGTAGCGTCTCAATGGC 10932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930832019518720