Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq47842 129 1e-24 seq6406 123 5e-23 seq8469 109 1e-18 seq937 109 1e-18 seq503 89.7 1e-12 >seq47842 Length=15337 Score = 129 bits (142), Expect = 1e-24 Identities = 174/240 (73%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 221944 ATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACA 222003 ||| ||| ||||||||| |||||| | || || |||||| ||| | ||| || Sbjct 10592 ATACAGCTTGTCAAACTCTTCACCCCAGCAATCCGACAAGCCTGGGCACTCGTTGGGGCA 10533 Query 222004 CATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAG 222063 |||||| | ||||| | ||| | | || | | |||||| ||||| || ||||| || Sbjct 10532 CATCAGGCACCAGTCTTGGTTCCCCTCCACGCGCCTCATGAACAGGTCTGGTATCCAGAG 10473 Query 222064 CGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCT-CAGATCCA 222122 | | ||||| || | || ||||||||||||| ||||| ||| ||| | ||| |||| Sbjct 10472 TCCGTAGAAGAGGTCGCGGGCCCGCTGCTCCTCCTTGCCGTGGTTCTTCTTGCAG-TCCA 10414 Query 222123 AAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 || ||||| ||||| |||||||| |||||||| |||| ||| | || ||||| |||| Sbjct 10413 GGAAATCAAAGATGTCGGCGTGCCAGGGCTCCAGGTAGATGGCAAAGGCACCGGGACGCT 10354 Score = 100 bits (110), Expect = 5e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 221123 ACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATG 221182 || ||||| || || || |||||||| | ||| | ||| ||| | || || ||| Sbjct 14190 ACCTGGAATTCACCAGACAGCACCCTGCGAGTGTAGATGTTGCTGGTGTATGGCTCAATG 14131 Query 221183 CTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGA 221242 |||||| ||||||||||||||||||||| ||||||||||||||| |||| ||| ||| Sbjct 14130 GACTCGTTATTGCCCAGGATCTGAGCCGTGGAGGCGGTGGGCATGGGGGCCAGCAGAAGA 14071 Query 221243 CTGTT 221247 ||||| Sbjct 14070 CTGTT 14066 >seq6406 Length=55272 Score = 123 bits (136), Expect = 5e-23 Identities = 173/240 (72%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 221944 ATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACA 222003 ||| ||| ||||||||| |||||| | || || ||| || ||| | ||| || Sbjct 29309 ATACAGCGTGTCAAACTCTTCACCCCAGCAATCCGACAAGCCCGGGCACTCGTTGGGGCA 29250 Query 222004 CATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAG 222063 |||||| | ||||| | ||| | | || | | |||||| ||||| || ||||| || Sbjct 29249 CATCAGGCACCAGTCTTGGTTCCCCTCCACGCGCCTCATGAACAGGTCTGGTATCCAGAG 29190 Query 222064 CGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCT-CAGATCCA 222122 | | ||||| || | || ||||||||||||| ||||| ||| ||| | ||| |||| Sbjct 29189 TCCGTAGAAGAGGTCGCGGGCCCGCTGCTCCTCCTTGCCGTGGTTCTTCTTGCAG-TCCA 29131 Query 222123 AAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 || ||||| ||||| |||||||| |||||||| |||| ||| | || ||||| |||| Sbjct 29130 GGAAATCAAAGATGTCGGCGTGCCAGGGCTCCAGGTAGATGGCAAAGGCACCGGGACGCT 29071 Score = 104 bits (114), Expect = 4e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 221123 ACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATG 221182 || ||||| || || || |||||||| | ||| | ||| ||| |||| || ||| Sbjct 33213 ACCTGGAATTCACCAGACAGCACCCTGCGAGTGTAGATGTTGCTGGTGTACGGCTCAATG 33154 Query 221183 CTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGA 221242 |||||||||||||||||||||||||||| |||||| |||||||| |||| ||| ||| Sbjct 33153 GACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCGGTAGGCATGGGGGCCAGCAGGAGA 33094 Query 221243 CTGTT 221247 ||||| Sbjct 33093 CTGTT 33089 >seq8469 Length=53876 Score = 109 bits (120), Expect = 1e-18 Identities = 160/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 25786 CTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAG 25845 ||||| |||||| ||| | |||| || ||||| |||||| ||||| |||| Sbjct 18106 CTGTTCAATGCCATTGAGACCCTACCTTGCGTCAAGCAGAAGGCTGACTGGGCGCTGAAC 18047 Query 25846 TGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAG 25905 ||||||||| | | | || | |||||| || | || ||||| |||||||||||| Sbjct 18046 TGGATCAACTCGGACATGCCCACCTACGGCGAGAGGGTTGTGGCCTTCGCTGCTGTGGAG 17987 Query 25906 GGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGAC-CAT 25964 ||||| || ||| || || || || ||||||||||||| ||| || ||||||| || Sbjct 17986 GGCATTTTCTTCTCGGGGTCCTTCGCCTCCATCTTCTGGCTGAAGAAG-AGGGGACTGAT 17928 Query 25965 GCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGG 26008 || ||| || || ||||| ||||| ||||| | || |||| Sbjct 17927 GCACGGCTTGACGTTCTCCAATGAGCTGATCAGTCGCGATGAGG 17884 Score = 100 bits (110), Expect = 5e-16 Identities = 187/269 (70%), Gaps = 12/269 (4%) Strand=Plus/Minus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 || || ||||| |||||||||||||| | || |||||| | ||| ||| | || Sbjct 19081 GACATCTGGGACATGTACAAGAAGGCAGAGGCGTCGTTCTGGACGGTCGAGGAGGTCGAC 19022 Query 25534 CTGGCCAAGGACATGGACGGCTGGTA--CGCTCTATCCAAAGACGAGCAGCATTTTCTCA 25591 || |||||||| | | |||| | | ||| | || |||||| ||| || || Sbjct 19021 CTCTCCAAGGACCTCCCAGACTGGGAGTCCCTCAAGCCG--GACGAGAGGCACTTCATCT 18964 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCT-GTGCGAG 25650 |||| ||||| ||||| || ||| || || || ||||||||||| || ||| ||| Sbjct 18963 CCCACGTCTTGGCGTTCTTCGCCGCCAGCGACGGCATCGTGAACGAGAACCTCGTG-GAG 18905 Query 25651 AGATTCACCAGGGAAGTGCAGTACGTG---GAGGCCAAGTGTTTCTACGGTTTCCAGATG 25707 | |||| | ||| || ||| ||| ||||| ||| |||||||| |||||||| Sbjct 18904 CGGTTCAGCCAGGAGGTTCAG---GTGCCCGAGGCGCGGTGCTTCTACGGGTTCCAGATC 18848 Query 25708 GCCATCGAAAATGTGCACTCTGAGGTGTA 25736 |||||||| || | ||||| ||| |||| Sbjct 18847 GCCATCGAGAACATTCACTCCGAGATGTA 18819 Score = 89.7 bits (98), Expect = 1e-12 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304 ||||| ||||| || ||||||||||| || ||||||| |||||||||||||| || ||| Sbjct 16417 AACCCCTTCGATTTCATGGAAAACATCTCCCTGGAAGGCAAGACCAACTTCTTCGAGAAG 16358 Query 26305 AGGGTCGGCGACTATCA 26321 ||||||||||| || || Sbjct 16357 AGGGTCGGCGAGTACCA 16341 >seq937 Length=97168 Score = 109 bits (120), Expect = 1e-18 Identities = 160/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 25786 CTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAG 25845 ||||| |||||| ||| | |||| || ||||| |||||| ||||| |||| Sbjct 93520 CTGTTCAATGCCATTGAGACCCTACCTTGCGTCAAGCAGAAGGCTGACTGGGCGCTGAAC 93461 Query 25846 TGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAG 25905 ||||||||| | | | || | |||||| || | || ||||| |||||||||||| Sbjct 93460 TGGATCAACTCGGACATGTCCACCTACGGCGAGAGGGTTGTGGCCTTCGCTGCTGTGGAG 93401 Query 25906 GGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGAC-CAT 25964 ||||| || ||| || || || || ||||||||||||| ||| || ||||||| || Sbjct 93400 GGCATTTTCTTCTCGGGCTCCTTCGCCTCCATCTTCTGGCTGAAGAAG-AGGGGACTGAT 93342 Query 25965 GCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGG 26008 || ||| || || ||||| ||||| ||||| | || |||| Sbjct 93341 GCACGGCTTGACGTTCTCCAATGAGCTGATCAGTCGCGATGAGG 93298 Score = 98.7 bits (108), Expect = 2e-15 Identities = 184/266 (69%), Gaps = 6/266 (2%) Strand=Plus/Minus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 || || ||||| |||||||||||||| | || |||||| | ||| ||| | || Sbjct 94287 GACATCTGGGACATGTACAAGAAGGCAGAGGCGTCGTTCTGGACGGTCGAGGAGGTCGAC 94228 Query 25534 CTGGCCAAGGACATGGACGGCTGGTA--CGCTCTATCCAAAGACGAGCAGCATTTTCTCA 25591 || |||||||| | | |||| | | ||| | || || ||| ||| || || Sbjct 94227 CTCTCCAAGGACCTCCCAGACTGGGAGTCCCTCAAGCCG--GATGAGAGGCACTTCATCT 94170 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCT-GTGCGAG 25650 |||| ||||| ||||| || ||| || || || ||||||||||| || ||| ||| Sbjct 94169 CCCACGTCTTGGCCTTCTTCGCCGCCAGCGACGGCATCGTGAACGAGAACCTCGTG-GAG 94111 Query 25651 AGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCC 25710 | |||| | ||| || ||| |||||| ||| |||||||| |||||||| ||| Sbjct 94110 CGGTTCAGCCAGGAGGTTCAGGTGCCGGAGGCGCGGTGCTTCTACGGGTTCCAGATCGCC 94051 Query 25711 ATCGAAAATGTGCACTCTGAGGTGTA 25736 ||||| || | ||||| ||| |||| Sbjct 94050 ATCGAGAACATTCACTCAGAGATGTA 94025 Score = 95.1 bits (104), Expect = 2e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304 ||||| ||||| || ||||||||||| || ||||||| |||||||||||||| |||||| Sbjct 91352 AACCCCTTCGATTTCATGGAAAACATCTCCCTGGAAGGCAAGACCAACTTCTTCGAAAAG 91293 Query 26305 AGGGTCGGCGACTATCA 26321 ||||||||||| || || Sbjct 91292 AGGGTCGGCGAGTACCA 91276 >seq503 Length=134583 Score = 89.7 bits (98), Expect = 1e-12 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304 ||||| ||||| || ||||| ||||| || |||||||||||||||| |||||||| ||| Sbjct 10178 AACCCTTTCGATTTCATGGAGAACATCTCTCTGGAAGGGAAGACCAATTTCTTTGAGAAG 10119 Query 26305 AGGGTCGGCGACTATCA 26321 ||||||||||| || || Sbjct 10118 AGGGTCGGCGAGTACCA 10102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928146041667520