Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq49 152 3e-31 seq6568 120 2e-21 >seq49 Length=210639 Score = 152 bits (168), Expect = 3e-31 Identities = 525/806 (65%), Gaps = 12/806 (1%) Strand=Plus/Plus Query 475367 ACAGCTGGAGATTCACATCTTGGTGGTGAAGATTTTGATAATAGACTTGT-ATCATGGTG 475425 || || || ||| | |||||||||||||| || ||||| ||| | ||||| | | || Sbjct 23840 ACGGCCGGCGATACTCATCTTGGTGGTGAGGACTTTGACAATCGTCTTGTCAACCACCTG 23899 Query 475426 TGTTGAAGATTTCAAGAGGAAAAATAAAGTTGATCTTTCAACATCTGCTAAAGCATTAAG 475485 | || ||| ||||||||||| ||| || | | ||| | | | | | | | Sbjct 23900 -GCTGGAGAATTCAAGAGGAAGTTTAAGAAGGACTTGACCACAAATCCAAGATCCCTCCG 23958 Query 475486 ACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTT-CTGCTACTCAAACTA 475544 || || || || ||| ||| | || ||| || |||| || | || |||||| | | Sbjct 23959 TCGACTGAGGACAGCTGCTGAGAGAGCCAAGAGAACTCTCTCAAGCAGC-ACTCAAGCAA 24017 Query 475545 CTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTA 475604 | ||||||| || ||||| |||||||| ||||| | | || || | | ||| Sbjct 24018 GTATTGAAGTGGACTCTCTCTTTGAAGGGATTGACTTCTACACATCCATCTCCCGAGCTC 24077 Query 475605 AATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTC 475664 ||||| || | ||| ||||||| || | | || | || || || | | Sbjct 24078 GCTTTGAGGAGCTATGTGCTGATCTGTTCCGTCAGTGCCTTAACCCAGTAGAGCGGGCAT 24137 Query 475665 TCAGAGATTCTAAACTTGACAA--ATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTC 475722 | ||| | ||| ||||||| ||| || | |||| |||| || || ||||| || Sbjct 24138 TGGTGGATGCAAAAGTTGACAAGAATCGCA--TTGATGAGGTTGTGCTGGTTGGAGGCTC 24195 Query 475723 AACAAGAATTCCAAAAATAAGAGAAATGCTTTCATCAT-ATTTTAATGGTAAAAAGTTAA 475781 ||| |||| || || || |||| || || || | | || || ||| | || | Sbjct 24196 CACACGAATCCCCAAGATTC-AGAAGCTGTTGCAAGATTACCTCAACGGAAAAGACTTGA 24254 Query 475782 ATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTT 475841 | | | ||||| ||||| || || || |||||||||||||| |||||||| || | Sbjct 24255 ACAGATCCATCAATCCAGATGAGGCAGTAGCTTATGGAGCTGCTGTACAAGCAGCCATCT 24314 Query 475842 TATCAGGTCAATCAGA-CGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTT 475900 | ||| | |||| | | | || || || | ||||| || || ||||| ||| Sbjct 24315 TGAGTGGT-GACCAGAGTGCAGAGGTCAAAGATGTTCTTCTTGTGGATGTTACTCCTCTT 24373 Query 475901 TCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCT 475960 ||| | || |||| || | ||| || || ||||| || || || || ||||| | | Sbjct 24374 TCACTTGGCATTGAGACTGCTGGGGGTATCATGACCAAACTGATCGAGAGAAACAGCCGC 24433 Query 475961 ATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACC 476020 |||||| ||| | ||| || ||| |||| ||| |||| || || | | || || Sbjct 24434 ATCCCAACCAAGACATCCAAGACATTCACCACCTATGCTGACAACCAGCCTGCAGTTACG 24493 Query 476021 ATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTT 476080 |||||| ||| |||||| |||||| | || ||||| || || || || | ||| Sbjct 24494 ATCCAAGTCTATGAAGGAGAAAGAGCTATGACAAAAGACAACAATCGTCTGGGCATCTTT 24553 Query 476081 AATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGAT 476140 | || | || || ||||| ||||| | || || || | |||||||| | || || Sbjct 24554 GAGCTAGCTGGCATCCCTCCAGCTCCTCGCGGTGTACCCAAGATTGAAGTCTCCTTAGAC 24613 Query 476141 ATTGATGCAAATGGTATTCTTAATGT 476166 |||||||| || ||||| || || || Sbjct 24614 ATTGATGCTAACGGTATACTCAACGT 24639 >seq6568 Length=53416 Score = 120 bits (132), Expect = 2e-21 Identities = 376/567 (66%), Gaps = 14/567 (2%) Strand=Plus/Minus Query 475607 TTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTC 475666 || ||||| |||| || |||||| || || | ||| ||| || || |||| || Sbjct 36789 TTCGAAGAACTTTGCTCCTCTCTCTTCAGGAAGGCTCTTGGACCGGTAGAGCAAGCCCTG 36730 Query 475667 AGAGATTCTAAACTTGACAAATCACAAG-TCCATGAAATTGTTCTTGTAGGAGGTTCAAC 475725 ||| | || || || || ||||| || || | |||| | |||||||| || || Sbjct 36729 TTGGATGCCAAGCTGGATAAGA-ACAAGGTCGATCAGGTTGTGATGGTAGGAGGCTCCAC 36671 Query 475726 AAGAATTCCAAAAATAAGAGAA-ATGCTTTCATCATATTTT-AATGGTAAAAAGTTAAAT 475783 ||||||||| || || |||| ||| || || || | | || || || | | || Sbjct 36670 AAGAATTCCCAAGATCC-AGAAGATG-TTGCAGGATTTCCTGAACGGGAAGGAACTGAAC 36613 Query 475784 GAAAGTGTA--AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTT 475841 |||| | ||||| || || ||||| ||||| || |||||||||||||| ||||| | Sbjct 36612 --AAGTCCATCAATCCAGACGAGGCTGTGGCATACGGTGCTGCTGTCCAAGCTGCTATCT 36555 Query 475842 TATCAGGTCAATCAGA-CGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTT 475900 | | ||| |||||| ||| | | || || || | || || |||||| | || || Sbjct 36554 TGACTGGT-GATCAGAGCGATGAGGTGAAAGATGTTCTCCTGGTGGACGTAGCACCTCTG 36496 Query 475901 TCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCT 475960 || | || | || || | ||| || | ||||| || ||| | || | || ||| | Sbjct 36495 TCTCTCGGCATCGAGACCGCTGGCGGTGTCATGACCAAGCTTGTGGAACGCAACTCTCGT 36436 Query 475961 ATCCCATGCAAA-AAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAAC 476019 ||||| |||| | ||| | || |||||||| ||||| || ||| || || | Sbjct 36435 ATCCCTACCAAAGCCAGCAAGA-CCTTCTCCACTTACTCTGACAACCAACCAGGAGTCAG 36377 Query 476020 CATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTT 476079 |||||| |||| ||||| || || | || || || || ||| || || || || Sbjct 36376 CATCCAGGTCTTCGAAGGAGAGCGAGCGATGACCAAGGACAACAACCTCCTGGGTACCTT 36317 Query 476080 TAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGA 476139 | | || || || |||||||| || | || || ||| | || || || | ||||| Sbjct 36316 TGAACTCTCTGGGATCCCTCCTGCACCACGCGGTGTGCCTAAGATCGATGTCTCCTTTGA 36257 Query 476140 TATTGATGCAAATGGTATTCTTAATGT 476166 |||||||| || || || || ||||| Sbjct 36256 CATTGATGCGAACGGCATCCTGAATGT 36230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3265597659122084