Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq3742 127 2e-24 seq4379 123 2e-23 seq47842 91.5 1e-13 seq6406 91.5 1e-13 seq9089 82.4 7e-11 >seq3742 Length=77992 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || || || || || || || ||||| || || ||| Sbjct 32791 GATGCAGATCTTCGTCAAGACCCTGACAGGCAAGACCATCACTCTCGAGGTCGAGCCCAG 32850 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || ||| ||||||||||||||||| || || || || || || Sbjct 32851 TGACACCATCGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCA 32910 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| ||||||||||||| || |||||||| ||| | | | |||| || || || Sbjct 32911 GCAGCGTCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAA 32970 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || || || || ||||| |||||||| | || |||| || || Sbjct 32971 CATCCAGAAAGAGTCCACACTCCACTTGGTTCTCCGTCTGCGTGGTGG 33018 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || ||||| || || || || || || || ||| Sbjct 33020 ATGCAGATCTTCGTCAAGACCCTGACAGGTAAGACCATCACTCTTGAGGTCGAGCCCAGT 33079 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| || |||||||||||||| || || || || || || Sbjct 33080 GACACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAAGAGGGCATCCCACCAGACCAG 33139 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| ||||| || |||||||| ||| | | | |||| || || ||| Sbjct 33140 CAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 33199 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || || || ||||| |||||||| | || |||| || || Sbjct 33200 ATCCAGAAAGAGTCCACACTCCACTTGGTTCTCCGTCTGCGTGGTGG 33246 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | || || ||||| || || || || || || ||| Sbjct 33248 ATGCAGATCTTCGTCAAGACCTTGACAGGCAAAACCATCACCCTTGAGGTCGAGCCCAGT 33307 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||||||||||| || || || || || || Sbjct 33308 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCAG 33367 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| ||||| || |||||||| ||| | | | |||| || || ||| Sbjct 33368 CAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 33427 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || || || || || ||| |||| | || |||| ||||| Sbjct 33428 ATCCAGAAAGAGTCCACCCTCCACCTGGTTCTCCGTCTGCGTGGAGG 33474 >seq4379 Length=69586 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || || || || || || || ||||| || || ||| Sbjct 40302 GATGCAGATCTTCGTCAAGACCCTGACAGGCAAGACCATCACTCTCGAGGTCGAGCCCAG 40243 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || ||| ||||||||||||||||| || || || || || || Sbjct 40242 TGACACCATCGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCA 40183 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| ||||||| ||||| || |||||||| ||| | | | |||| || || || Sbjct 40182 GCAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAA 40123 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || || || || ||||| |||||||| | || |||| || || Sbjct 40122 CATCCAGAAAGAGTCCACACTCCACTTGGTTCTCCGTCTGCGTGGTGG 40075 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || ||| Sbjct 39289 ATGCAGATCTTCGTCAAGACCCTGACAGGCAAGACCATCACTCTTGAGGTCGAGCCCAGT 39230 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||||||||||| || || || || || || Sbjct 39229 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCAG 39170 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| ||||| || |||||||| ||| | | | |||| || || ||| Sbjct 39169 CAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 39110 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || || || || || |||||||| | || |||| ||||| Sbjct 39109 ATCCAGAAAGAGTCCACCCTCCACTTGGTTCTCCGTCTGCGTGGAGG 39063 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || || || || || || || || || || || ||| Sbjct 49925 GATGCAGATCTTCGTCAAGACCCTGACAGGCAAGACCATCACTCTTGAGGTCGAGCCCAG 49866 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || ||| ||||||||||||||||| || || || || || || Sbjct 49865 TGACACCATCGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCA 49806 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| ||||||| || || || |||||||| ||| | | | |||| || || || Sbjct 49805 GCAGCGTCTGATCTTCGCTGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAA 49746 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || || || || || || |||||||| | || |||| || || Sbjct 49745 CATCCAGAAAGAGTCCACCCTCCACTTGGTTCTCCGTCTGCGTGGTGG 49698 Score = 102 bits (112), Expect = 7e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || ||||| || ||||| || || || || | | Sbjct 39845 ATGCAGATCTTCGTCAAGACCCTGACGGGTAAGACCATTACTCTTGAGGTCGAGCCAAGT 39786 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| ||||||||||||||||| || || || || || || Sbjct 39785 GACACCATCGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCAG 39726 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| ||||| || |||||||| ||| | | | |||| || || ||| Sbjct 39725 CAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 39666 Query 24884 ATTCAAAAGGAATC 24897 || || || || || Sbjct 39665 ATCCAGAAAGAGTC 39652 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 ||||||||||||||||| || || || || || || || ||| ||||||| ||||| || Sbjct 39575 AAGATCCAAGACAAAGAGGGCATCCCACCAGACCAGCAGCGTCTGATCTTCGCCGGAAAG 39516 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 |||||||| ||| | | | |||| || || ||||| || || || || ||||| ||| Sbjct 39515 CAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACATCCAGAAAGAGTCCACACTCCAC 39456 Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930 ||||| | || |||| || || Sbjct 39455 TTGGTTCTCCGTCTGCGTGGTGG 39433 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || | || ||||| || ||||| || || || || | | Sbjct 40073 ATGCAAATCTTCGTCAAGACCTTGACGGGTAAGACCATTACCCTTGAGGTCGAGCCAAGT 40014 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | | | || || |||||||||||||| || || || || || || || Sbjct 40013 GACACCATCAAGAATGTCAAGGCCAAGATCCAAGACAACGAGGGCATCCCACCAGACCAG 39954 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | |||| ||||||| | |||||||| ||| | | | |||| || || ||| Sbjct 39953 CAGCATCTGATTTTTGCCGTAATGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 39894 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || || || ||||| |||||||| | || |||| || || Sbjct 39893 ATCCAGAAAGAGTCCACACTCCACTTGGTTCTCCGTCTGCGTGGTGG 39847 >seq47842 Length=15337 Score = 91.5 bits (100), Expect = 1e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 138508 ACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAAC 138567 ||||| |||||||| | || || | ||| ||| |||||| ||||| | ||||||| Sbjct 14190 ACCTGGAATTCACCAGACAGCACCCTGCGAGTGTAGATGTTGCTGGTGTATGGCTCAATG 14131 Query 138568 GATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGA 138627 || ||||| || ||||| ||||||||||||| ||||| |||||| |||| || |||| Sbjct 14130 GACTCGTTATTGCCCAGGATCTGAGCCGTGGAGGCGGTGGGCATGGGGGCCAGCAGAAGA 14071 >seq6406 Length=55272 Score = 91.5 bits (100), Expect = 1e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 138508 ACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAAC 138567 ||||| |||||||| | || || | ||| ||| |||||| ||||| | ||||||| Sbjct 33213 ACCTGGAATTCACCAGACAGCACCCTGCGAGTGTAGATGTTGCTGGTGTACGGCTCAATG 33154 Query 138568 GATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATG 138612 || |||||||| ||||| ||||||||||||| ||||| |||||| Sbjct 33153 GACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCGGTAGGCATG 33109 Score = 82.4 bits (90), Expect = 7e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 139105 ACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTA 139164 || ||||| ||| | ||| |||| ||| |||| |||| |||||||||||||| || Sbjct 30247 ACCTCGTCCGGGCTGGAGTACTCGATAATCTCGGTGCACAGGTTACTACACTTGATGGTG 30188 Query 139165 CCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTG 139224 || | || || || || || || | ||| || ||||||||||| ||||| ||||| || Sbjct 30187 CCAAGGTTCTGCTGGTTACTCTTACTGTTGCAGGCATCTTTGTACAGCATGTACGGGGTA 30128 Query 139225 CCAGTTTC 139232 || || || Sbjct 30127 CCGGTCTC 30120 >seq9089 Length=72386 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||| ||||| ||||| || || || || || || | ||||||||||||| || Sbjct 52026 AAGATCCAGGACAAGGAAGGCATCCCGCCAGACCAGCAGAGGCTGATCTTTGCCGGCAAG 52085 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 ||||||||||| | | | | || || || ||||| || ||||| || || || ||| Sbjct 52086 CAGCTGGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACGCTCCAC 52145 Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930 ||||| || | |||| || || Sbjct 52146 CTGGTGCTGAGGCTGCGGGGCGG 52168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449559147659240