Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq9416 105 6e-18 seq12397 96.9 3e-15 >seq9416 Length=13610 Score = 105 bits (116), Expect = 6e-18 Identities = 125/168 (74%), Gaps = 6/168 (4%) Strand=Plus/Minus Query 34320 AGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAG 34379 ||| || |||||||| || || ||||||| |||| |||| | |||||| | || || || Sbjct 2993 AGTTTCTGGGTTGTCGCACTCGGGACACAGCACATACTTCCTGATGAAGACGTCCAGGAG 2934 Query 34380 GTCCTGTAACTTAACGGA---GTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTA 34436 || || ||||| ||| ||||||||||||||| |||||||| || ||||| ||| | Sbjct 2933 ATCTTGCAACTT---GGACACGTCGTGGGAGCCGTTCACGATGAAGCGCTCGTTCTTGAA 2877 Query 34437 ATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGG 34484 || | || || || || || ||||| || || ||| |||| || || Sbjct 2876 GTCAAATTGAGTCTGAGCTCCGAGCTCACAGCCAAAGAACTTGGTTGG 2829 >seq12397 Length=13568 Score = 96.9 bits (106), Expect = 3e-15 Identities = 123/168 (73%), Gaps = 6/168 (4%) Strand=Plus/Plus Query 34320 AGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAG 34379 ||| || |||||||| || || ||||||| |||| |||| | |||||| | || || || Sbjct 6401 AGTTTCTGGGTTGTCGCACTCGGGACACAGCACATACTTCCTGATGAAGACGTCCAGGAG 6460 Query 34380 GTCCTGTAACTTAACGGA---GTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTA 34436 || || ||||| ||| ||| ||||||||||| ||||| || || ||||| ||| | Sbjct 6461 ATCTTGCAACTT---GGACACGTCATGGGAGCCGTTCACGATAAAGCGCTCGTTCTTGAA 6517 Query 34437 ATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGG 34484 || | || || || || || ||||| || || ||| |||| || || Sbjct 6518 GTCAAATTGAGTCTGAGCTCCGAGCTCACAGCCAAAGAACTTGGTTGG 6565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412538788814219