Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq4379 113 3e-20 seq3742 109 4e-19 >seq4379 Length=69586 Score = 113 bits (124), Expect = 3e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||| || ||||| || || ||||| ||||| || ||||| || || | Sbjct 49698 CCACCACGCAGACGGAGAACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 49757 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || || ||||| | |||| | ||||| || || || Sbjct 49758 AGGGTGCGGCCATCTTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGGTGGG 49817 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || |||||||||||||| | || ||||||| | || | |||||| | || || Sbjct 49818 ATGCCCTCTTTGTCTTGGATCTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCGACC 49877 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 |||||||| || || ||||| || | ||| || || || |||||||| || Sbjct 49878 TCAAGAGTGATGGTCTTGCCTGTCAGGGTCTTGACGAAGATCTGCATCTT 49927 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 29557 TGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCC 29616 || ||||| | || ||| || ||||| || || ||||| ||||| || ||||| || || Sbjct 39060 TGCCCTCCACGCAGACGGAGAACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCA 39119 Query 29617 GCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGC 29676 | | |||||| ||| || || || || || || | |||| | ||||| || || Sbjct 39120 GACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGT 39179 Query 29677 GGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCT 29736 || || |||||||||||||| | || |||||| | || | |||||| | || Sbjct 39180 GGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCG 39239 Query 29737 ACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||||||| || || ||||| || | ||| || || || |||||||| Sbjct 39240 ACCTCAAGAGTGATGGTCTTGCCTGTCAGGGTCTTGACGAAGATCTGCAT 39289 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||| || ||||| || || ||||| ||||| || ||||| || || | Sbjct 40075 CCACCACGCAGACGGAGAACCAAGTGGAGTGTGGACTCTTTCTGGATGTTGTAGTCAGAC 40134 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || || || || | |||| | ||||| || || || Sbjct 40135 AGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGG 40194 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || |||||||||||||| | || ||||||| | || | |||||| | || || Sbjct 40195 ATGCCCTCTTTGTCTTGGATCTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCGACC 40254 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || ||||| || || ||||| || | ||| || || || |||||||| || Sbjct 40255 TCGAGAGTGATGGTCTTGCCTGTCAGGGTCTTGACGAAGATCTGCATCTT 40304 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 29591 TGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAG 29650 |||| ||||| || ||||| || || | | |||||| ||| || || || || || | Sbjct 39650 TGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGG 39709 Query 29651 CATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGA 29710 | | |||| | ||||| || || || || |||||||||||||| | || ||||| Sbjct 39710 CGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGATCTTGGCTTTGA 39769 Query 29711 CAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTT 29770 || | || | |||||| | || || |||||||| || || || || || | ||| | Sbjct 39770 CATTCTCGATGGTGTCACTTGGCTCGACCTCAAGAGTAATGGTCTTACCCGTCAGGGTCT 39829 Query 29771 TAACAAATATCTGCAT 29786 | || || |||||||| Sbjct 39830 TGACGAAGATCTGCAT 39845 >seq3742 Length=77992 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||| || ||||| || || ||||| ||||| || ||||| || || | Sbjct 33018 CCACCACGCAGACGGAGAACCAAGTGGAGTGTGGACTCTTTCTGGATGTTGTAGTCAGAC 32959 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || || || ||| | |||| | ||||| || || || Sbjct 32958 AGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGTGGG 32899 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || |||||||||||||| | || ||||||| | || | |||||| | || || Sbjct 32898 ATGCCCTCTTTGTCTTGGATCTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCGACC 32839 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || ||||| || || ||||| || | ||| || || || |||||||| || Sbjct 32838 TCGAGAGTGATGGTCTTGCCTGTCAGGGTCTTGACGAAGATCTGCATCTT 32789 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 29557 TGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCC 29616 || ||||| | || ||| || |||| || || ||||| ||||| || ||||| || || Sbjct 33477 TGCCCTCCACGCAGACGGAGAACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCA 33418 Query 29617 GCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGC 29676 | | |||||| ||| || || || || || || | |||| | ||||| || || Sbjct 33417 GACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGT 33358 Query 29677 GGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCT 29736 || || |||||||||||||| | || |||||| | || | |||||| | || Sbjct 33357 GGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCG 33298 Query 29737 ACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || || |||||||| || ||||| || || || |||||||| Sbjct 33297 ACCTCAAGGGTGATGGTTTTGCCTGTCAAGGTCTTGACGAAGATCTGCAT 33248 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||| || ||||| || || ||||| ||||| || ||||| || || | Sbjct 33246 CCACCACGCAGACGGAGAACCAAGTGGAGTGTGGACTCTTTCTGGATGTTGTAGTCAGAC 33187 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || || || || | |||| | ||||| || || || Sbjct 33186 AGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGG 33127 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || |||||||||||||| | ||| ||||||| | || | |||||| | || || Sbjct 33126 ATGCCCTCTTTGTCTTGGATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCGACC 33067 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || || || || || | ||| || || || |||||||| Sbjct 33066 TCAAGAGTGATGGTCTTACCTGTCAGGGTCTTGACGAAGATCTGCAT 33020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384936649300803