Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq49 277 1e-68 >seq49 Length=210639 Score = 277 bits (306), Expect = 1e-68 Identities = 734/1101 (67%), Gaps = 24/1101 (2%) Strand=Plus/Minus Query 281432 ACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTC 281491 || || || ||||| || ||||| | || || | ||||||||| | || || || | Sbjct 24639 ACGTTGAGTATACCGTTAGCATCAATGTCTAAGGAGACTTCAATCTTGGGTACACCGCGA 24580 Query 281492 TGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAAT 281551 |||| || ||||| || | | | ||| | |||||| ||| || ||||| || | Sbjct 24579 GGAGCTGGAGGGATGCCAGCTAGCTCAAAGATGCCCAGACGATTGTTGTCTTTTGTCATA 24520 Query 281552 TTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTA 281611 || ||| || || | | |||||| |||||| ||| || || || | ||| || || Sbjct 24519 GCTCTTTCTCCTTCATAGACTTGGATCGTAACTGCAGGCTGGTTGTCAGCATAGGTGGTG 24460 Query 281612 AATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATA 281671 ||| ||||| | || || || ||||||| || || | |||||||| ||| Sbjct 24459 AATGTCTTGGATGTCTTGGTTGGGATGCGGCTGTTTCTCTCGATCAGTTTGGTCATGATA 24400 Query 281672 CCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGA 281731 || ||||| || || | ||||| ||||||||||| ||||| || || | || || || Sbjct 24399 CCCCCAGCAGTCTCAATGCCAAGTGAAAGAGGAGTAACATCCACAAGAAGAACATCTTTG 24340 Query 281732 AGTTTTTCA-TCAGTTTGACCAA-CAAGAATAGCTGCTTGAATAGCAGCACCATATGCAA 281789 | | | || || | | |||| ||||| | |||||||| | |||||| ||||| || | Sbjct 24339 ACCTCTGCACTCTGGTC-ACCACTCAAGA-TGGCTGCTTGTACAGCAGCTCCATAAGCTA 24282 Query 281790 CAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-TTGAAAGA 281848 | || ||||| ||||| | | | || | | ||| || |||| ||| ||| || | Sbjct 24281 CTGCCTCATCTGGATTGATGGATCTGTTCAAGTCTTTTCCGTTGAGGTAATCTTGCAACA 24222 Query 281849 AGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGT 281908 || | | ||| || || || | || |||||||| | |||| |||| | || Sbjct 24221 GCTTCTGA-ATCTTGGGGATTCGTGTGGAGCCTCCAACCAGCACAACCTCATCAA--TGC 24165 Query 281909 GATT--TATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAA 281966 |||| | || | ||||| ||||| || | || || || | ||| | | | Sbjct 24164 GATTCTTGTCAACTTTTGCATCCACCAATGCCCGCTCTACTGGGTTAAGGCACTGACGGA 24105 Query 281967 ACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAAT 282024 ||| || | ||| || || || || ||||| | ||| || | || || ||||| Sbjct 24104 ACAGATCAGCACATAGCTCCTCAAAGCGAGCTCGGG--AGATGGATGTGTAGAAGTCAAT 24047 Query 282025 TCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTC--GAAGAAGATAGTGCACGT 282082 ||||| || | ||| || |||||||| | | |||||| | ||| ||| | | Sbjct 24046 CCCTTCAAAGAGAGAGTCCACTTCAATACTTGCTTGAGTGCTGCTTGAGAGAGTTCTC-- 23989 Query 282083 TTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGAT--TCAAAT 282140 || || | ||| |||||||| |||| || | || | ||| |||| | |||| | Sbjct 23988 TTGGCTCTCTCAGCAGCTGTCCTCAGTCGACGGAGGGATCTTG--GATTTGTGGTCAAGT 23931 Query 282141 CTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTT-ACAAGACGATTATCAAAA 282199 | | ||| | || |||||||| ||| || | || ||| ||||||||||| ||||| Sbjct 23930 CCTTCTTAAACTTCCTCTTGAATTCTCCAGC-CAGGTGGTTGACAAGACGATTGTCAAAG 23872 Query 282200 TCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCA 282259 || ||||| || | | ||||| || | ||| | || | || | ||||| ||| Sbjct 23871 TCCTCACCACCAAGATGAGTATCGCCGGCCGTGGAGAGAACCTCAAACATGCCATCCTCA 23812 Query 282260 AGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATT 282319 | || || | || |||||| ||| ||||| || | ||||||||| || |||| | | Sbjct 23811 ATAGCCAGGACAGACACATCAAAGGTGCCACCTCCTAGATCAAAAATCAGAACATGCTTC 23752 Query 282320 TCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATA 282379 || | | ||||| || || || || || || || ||||| || |||||||| || Sbjct 23751 TCCCCTTGCAGCTTTTTGTCCAGTCCGTAGGCCAAGGCGGCAGCTGTGGGTTCATTGATG 23692 Query 282380 ATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAA 282439 || || | |||||| ||||||||||| ||| |||||||| || |||||||| || ||| Sbjct 23691 ATCCTGAGAACATTGAGACCAGCAATCACTCCGGCATCTTTGGTAGCTTGTCTCTGGGAA 23632 Query 282440 TCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCG 282499 || || || ||||| || ||||| || || |||||||| || | | |||| ||| || Sbjct 23631 TCATTGAAGTATGCTGGTACAGTGATGACAGCATCTGTAACCTTATGCCCAAGATATGCC 23572 Query 282500 CTTGCTGTTTGTTTCATTTTA 282520 ||||| | ||||| ||| Sbjct 23571 TCGGCTGTCTCCTTCATCTTA 23551 Score = 89.7 bits (98), Expect = 4e-12 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 282716 GCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATAT 282775 ||| |||| | ||||| ||||||||||| || || || || || || | ||||| Sbjct 22932 GCAACTTGGTTCTTGGCGGCATCTCCAATAAGTCTCTCCGTGTCGGTGAAGGCGACATAA 22873 Query 282776 GATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCAT 282835 || || || ||||| ||||| ||||| ||||| || || ||||| ||||| || | Sbjct 22872 CTGGGTGTGGTACGATTGCCTTGTTCATTGGCAATGATCTCCACTTTGCCATTCTGGAAG 22813 Query 282836 ACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 282879 ||||||||||| | | || || ||||| || || || ||||| Sbjct 22812 ACACCTACACAGGAATACGTCGTGCCTAAGTCGATGCCGATAGC 22769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3737675669033358