Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq3742 131 2e-25 seq4379 127 2e-24 seq4762 107 2e-18 seq9089 102 8e-17 seq6406 89.7 5e-13 seq47842 84.2 2e-11 >seq3742 Length=77992 Score = 131 bits (144), Expect = 2e-25 Identities = 150/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| || ||||| || || ||| | | | || || |||||||| | Sbjct 33445 GGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA-TCTTCCAGCTGCTTTC 33387 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || || ||||||||||| || |||||||| || ||||| |||||| || Sbjct 33386 CGGCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGATCTTGGCCT 33327 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||| | ||||| ||||||| || || | ||||| ||||||||| |||| | Sbjct 33326 TGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTTTTGCCTGTCAAGG 33267 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 33266 TCTTGACGAAGATCTGCAT 33248 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| || ||||| || || ||| | | | || || |||||||| || Sbjct 32988 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA-TCTTCCAGCTGCTTTCC 32930 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || ||||||||||| || |||||||| || ||||| |||||| || Sbjct 32929 GGCAAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGATCTTGGCTTT 32870 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | ||||| ||||||| || |||| |||| ||| ||||| ||||| || Sbjct 32869 GACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGAGTGATGGTCTTGCCTGTCAGGGT 32810 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 32809 CTTGACGAAGATCTGCAT 32792 Score = 114 bits (126), Expect = 1e-20 Identities = 148/199 (74%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| || ||||| || || ||| | | | || || |||||||| || Sbjct 33216 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA-TCTTCCAGCTGCTTTCC 33158 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-T 133581 ||| | || || ||||||||||| || |||||||| || ||||| ||| ||| || | Sbjct 33157 GGCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGAT-TTTGGCTT 33099 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||| | ||||| ||||||| || || | |||| ||| || || ||||| | Sbjct 33098 TGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTACCTGTCAGGG 33039 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 33038 TCTTGACGAAGATCTGCAT 33020 >seq4379 Length=69586 Score = 127 bits (140), Expect = 2e-24 Identities = 154/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||||||||||||||| || ||||| || || ||| | | | || || || Sbjct 39084 AAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA-TCTTCCAG 39142 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || ||| | || || ||||||||||| || |||||||| || ||||| ||| Sbjct 39143 CTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGAT 39202 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | ||| | ||||| ||||||| || || | |||| ||| ||||| Sbjct 39203 CTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTGCC 39262 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || ||||| |||||||| Sbjct 39263 TGTCAGGGTCTTGACGAAGATCTGCAT 39289 Score = 125 bits (138), Expect = 7e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| || ||||| || || ||| | | | || || |||||||| || Sbjct 40105 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA-TCTTCCAGCTGCTTTCC 40163 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || ||||||||||| || |||||||| || ||||| |||||| || Sbjct 40164 GGCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGATCTTGGCTTT 40223 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | ||||| ||||||| || |||| |||| ||| ||||| ||||| || Sbjct 40224 GACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGAGTGATGGTCTTGCCTGTCAGGGT 40283 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 40284 CTTGACGAAGATCTGCAT 40301 Score = 123 bits (136), Expect = 2e-23 Identities = 153/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||||||||||||||| || ||||| || || ||| | | | || || || Sbjct 49719 AAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA-TCTTCCAG 49777 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || ||| | || || ||||||||||| || |||||||| || ||||| ||| Sbjct 49778 CTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGAT 49837 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| |||| | ||| | ||||| ||||||| || || | |||| ||| ||||| Sbjct 49838 CTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTGCC 49897 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || ||||| |||||||| Sbjct 49898 TGTCAGGGTCTTGACGAAGATCTGCAT 49924 Score = 105 bits (116), Expect = 6e-18 Identities = 143/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 133465 TGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCC 133523 ||||||||||||| || ||||| || || ||| | | | || || |||||||| || Sbjct 39650 TGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA-TCTTCCAGCTGCTTTCCG 39708 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || || ||||||||||| || |||||||| || ||||| |||||| ||| Sbjct 39709 GCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGATCTTGGCTTTG 39768 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||| | ||||| || || | || | ||| || || ||||| || Sbjct 39769 ACATTCTCGATGGTGTCACTTGGCTCGACCTCAAGAGTAATGGTCTTACCCGTCAGGGTC 39828 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 39829 TTGACGAAGATCTGCAT 39845 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| || ||||| || || ||| | | | || || |||||| | | Sbjct 39877 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA-TCTTCCAGCTGCATTAC 39935 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || |||| || |||||||||| || |||||||| || ||||| |||||| ||| Sbjct 39936 GGCAAAAATCAGATGCTGCTGGTCTGGTGGGATGCCCTCGTTGTCTTGGATCTTGGCCTT 39995 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||| | ||||| || || | ||| | ||| || || |||| || Sbjct 39996 GACATTCTTGATGGTGTCACTTGGCTCGACCTCAAGGGTAATGGTCTTACCCGTCAAGGT 40055 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| || ||||| Sbjct 40056 CTTGACGAAGATTTGCAT 40073 >seq4762 Length=92317 Score = 107 bits (118), Expect = 2e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| ||| | ||| |||||| ||||||||||| Sbjct 80933 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCG 80874 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || |||| ||||||||| || ||||||||||||||||| |||||| |||| Sbjct 80873 GCGAAGATCAGCCTCTGCTGGTCTGGCGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTG 80814 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCAC 133612 | | ||| | |||||| ||||||| || Sbjct 80813 ACATTCTCGATGGTGTCGCTGGGCTCAAC 80785 >seq9089 Length=72386 Score = 102 bits (112), Expect = 8e-17 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| ||| | ||| |||||| ||||||||||| Sbjct 52138 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCG 52079 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || |||| ||||||||| || ||||||||||||||||| |||||| |||| Sbjct 52078 GCAAAGATCAGCCTCTGCTGGTCTGGCGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTG 52019 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCAC 133612 | | ||| | |||||| ||||||| || Sbjct 52018 ACATTCTCGATGGTGTCGCTGGGCTCAAC 51990 >seq6406 Length=55272 Score = 89.7 bits (98), Expect = 5e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 148850 CTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCC 148909 ||| |||||| | |||||| | ||||||| |||||| || || || ||||| ||| Sbjct 30245 CTCGTCCGGGCTGGAGTACTCGATAATCTCGGTGCACAGGTTACTACACTTGATGGTGCC 30186 Query 148910 CACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963 | ||||| || || ||||| |||||||| || || ||||||||||||||||| Sbjct 30185 AAGGTTCTGCTGGTTACTCTTACTGTTGCAGGCATCTTTGTACAGCATGTACGG 30132 >seq47842 Length=15337 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 148865 GTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATT 148924 |||||| | ||||| | |||||| || ||||| ||||| ||| | ||||| || || Sbjct 11517 GTACTCGATAATCTCAGTGCACAGGTTACTGCACTTGATGGTGCCAAGGTTCTGCTGGTT 11458 Query 148925 GCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963 ||||| |||||||| || || ||||||||||||||||| Sbjct 11457 ACTCTTACTGTTGCAGGCATCTTTGTACAGCATGTACGG 11419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483057128574920