Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq3742 123 2e-23 seq4379 109 4e-19 >seq3742 Length=77992 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | ||||| || || ||| |||||| || |||||||| || || Sbjct 33247 ACCACCACGCAGACGGAGAACCAAGTGGAGTGTGGACTCTTTCTGGATGTTGTAGTCAGA 33188 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| || |||||||| || |||| ||||||||| ||| | || Sbjct 33187 CAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGTGG 33128 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || |||||||| ||||| ||| | ||| || | |||||| || | || | Sbjct 33127 GATGCCCTCTTTGTCTTGGATTTTGGCTTTGA-CATTCTCGATGGTGTCACTGGGCTCGA 33069 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| || |||||||| | || || || |||||||||||| Sbjct 33068 CCTCAAGAGTGATGGTCTTACCTGTCAGGGTCTTGACGAAGATCTGCATA 33019 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | ||||| || || ||| |||||| || |||||||| || || Sbjct 33019 ACCACCACGCAGACGGAGAACCAAGTGGAGTGTGGACTCTTTCTGGATGTTGTAGTCAGA 32960 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| || ||||||||||| |||| ||||||||| ||| | || Sbjct 32959 CAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGTGG 32900 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || |||||||| || || | || |||| || | |||||| || | || | Sbjct 32899 GATGCCCTCTTTGTCTTGGATCTT-GGCTTTGACATTCTCGATGGTGTCACTGGGCTCGA 32841 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || ||||| | || || || ||||||||||| Sbjct 32840 CCTCGAGAGTGATGGTCTTGCCTGTCAGGGTCTTGACGAAGATCTGCAT 32792 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || | || ||| | |||| || || ||| |||||| || |||||||| || || Sbjct 33474 CCTCCACGCAGACGGAGAACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 33415 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || |||||||| || |||| ||||||||| ||| | || Sbjct 33414 AGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGG 33355 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || |||||||| || || || | ||| || | |||||| || | || || Sbjct 33354 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGA-CATTCTCGATGGTGTCACTGGGCTCGAC 33296 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| ||||| ||||| ||||| || || || || |||||||||||| Sbjct 33295 CTCAAGGGTGATGGTTTTGCCTGTCAAGGTCTTGACGAAGATCTGCATA 33247 >seq4379 Length=69586 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | ||||| || || ||| |||||| || |||||||| || || Sbjct 40074 ACCACCACGCAGACGGAGAACCAAGTGGAGTGTGGACTCTTTCTGGATGTTGTAGTCAGA 40133 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| || |||||||| || |||| ||||||||| ||| | || Sbjct 40134 CAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGTGG 40193 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || |||||||| || || ||| | ||| || | |||||| || | || | Sbjct 40194 GATGCCCTCTTTGTCTTGGATCTTGGCTTTGA-CATTCTCGATGGTGTCACTGGGCTCGA 40252 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || ||||| | || || || ||||||||||| Sbjct 40253 CCTCGAGAGTGATGGTCTTGCCTGTCAGGGTCTTGACGAAGATCTGCAT 40301 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | ||||| || || ||| |||||| || |||||||| || || Sbjct 49697 ACCACCACGCAGACGGAGAACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGA 49756 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| || ||||| || || |||| ||||||||| ||| | || Sbjct 49757 CAGGGTGCGGCCATCTTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGGTGG 49816 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || |||||||| || || ||| | ||| || | |||||| || | || | Sbjct 49817 GATGCCCTCTTTGTCTTGGATCTTGGCTTTGA-CATTCTCGATGGTGTCACTGGGCTCGA 49875 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| ||||| || || ||||| | || || || ||||||||||| Sbjct 49876 CCTCAAGAGTGATGGTCTTGCCTGTCAGGGTCTTGACGAAGATCTGCAT 49924 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || | || ||| | ||||| || || ||| |||||| || |||||||| || || Sbjct 39063 CCTCCACGCAGACGGAGAACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 39122 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || |||||||| || |||| ||||||||| ||| | || Sbjct 39123 AGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGG 39182 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || |||||||| || || || | ||| || | |||||| || | || || Sbjct 39183 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGA-CATTCTCGATGGTGTCACTGGGCTCGAC 39241 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| ||||| || || ||||| | || || || |||||||||||| Sbjct 39242 CTCAAGAGTGATGGTCTTGCCTGTCAGGGTCTTGACGAAGATCTGCATA 39290 Score = 100 bits (110), Expect = 2e-16 Identities = 140/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 |||||| || |||||||| || || || ||||| | || |||| || |||||||| || Sbjct 39654 CTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCGAA 39713 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 |||| ||||||||| ||| | || | || |||||||| || || ||| | ||| Sbjct 39714 GATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGATCTTGGCTTTGA-CAT 39772 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 || | |||||| |||| || || |||| || || || ||||| || | || || | Sbjct 39773 TCTCGATGGTGTCACTTGGCTCGACCTCAAGAGTAATGGTCTTACCCGTCAGGGTCTTGA 39832 Query 33737 CAAAGATCTGCATA 33750 | |||||||||||| Sbjct 39833 CGAAGATCTGCATA 39846 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | ||||| || || ||| |||||| || |||||||| || || Sbjct 39846 ACCACCACGCAGACGGAGAACCAAGTGGAGTGTGGACTCTTTCTGGATGTTGTAGTCAGA 39905 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| || || |||||||||||| | ||||||| ||| | || Sbjct 39906 CAGGGTGCGGCCATCTTCCAGCTGCATTACGGCAAAAATCAGATGCTGCTGGTCTGGTGG 39965 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || || | | | | |||||| |||| || || Sbjct 39966 GATGCCCTCGTTGTCTTGGATCTTGGCCTTGACATTCTTGATGGTGTCACTTGGCTCGAC 40025 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| || || || ||||| || || || || || ||||| |||||| Sbjct 40026 CTCAAGGGTAATGGTCTTACCCGTCAAGGTCTTGACGAAGATTTGCATA 40074 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || || ||| |||| | | |||||||| || || || ||||| | || ||| Sbjct 49488 ACCAACTGGAGGGTGAACTCTCTCTTGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 49547 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | || || |||||||||||| | ||||||| ||| | || | || || ||||| Sbjct 49548 AGCTGCATTACGGCAAAAATCAGATGCTGCTGGTCTGGTGGGATGCCCTCGTTGTCTTGG 49607 Query 33661 ATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTA 33720 || || || | | | | |||||| |||| || || |||| || || || ||| Sbjct 49608 ATCTTGGCCTTGACATTCTTGATGGTGTCACTTGGCTCGACCTCAAGGGTAATGGTCTTA 49667 Query 33721 CCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || || || || || |||||||||||| Sbjct 49668 CCCGTCAAGGTCTTGACGAAGATCTGCATA 49697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328462902087360