Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq4379 98.7 2e-15 seq3742 98.7 2e-15 >seq4379 Length=69586 Score = 98.7 bits (108), Expect = 2e-15 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || || ||||| || || |||||| | || || || |||| Sbjct 39286 CAGATCTTCGTCAAGACCCTGACAGGCAAGACCATCACTCTTGAGGTCGAGCCCAGTGAC 39227 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| ||||| ||||| || || || ||| || Sbjct 39226 ACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCAGCAG 39167 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || |||||||||||||||||| |||||||||| | || || | || |||||| || Sbjct 39166 CGTCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACATC 39107 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTT 206379 ||||||||||| || || ||| | ||| Sbjct 39106 CAGAAAGAGTCCACCCTCCACTTGGTT 39080 Score = 98.7 bits (108), Expect = 2e-15 Identities = 148/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || || ||||| || || |||||| | || || || |||| Sbjct 40298 CAGATCTTCGTCAAGACCCTGACAGGCAAGACCATCACTCTCGAGGTCGAGCCCAGTGAC 40239 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || |||| || ||||| || ||| ||||| ||||| || || || ||| || Sbjct 40238 ACCATCGAGAATGTCAAAGCCAA-GATCCAAGACAAAGAGGGCATCCCACCAGACCAGCA 40180 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | || |||||||||||||||||| |||||||||| | || || | || |||||| | Sbjct 40179 GCGTCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACAT 40120 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTT 206379 |||||||||||| || || ||| | ||| Sbjct 40119 CCAGAAAGAGTCCACACTCCACTTGGTT 40092 Score = 93.3 bits (102), Expect = 1e-13 Identities = 147/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || || ||||| || || |||||| | || || || |||| Sbjct 49921 CAGATCTTCGTCAAGACCCTGACAGGCAAGACCATCACTCTTGAGGTCGAGCCCAGTGAC 49862 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || |||| || ||||| || ||| ||||| ||||| || || || ||| || Sbjct 49861 ACCATCGAGAATGTCAAAGCCAA-GATCCAAGACAAAGAGGGCATCCCACCAGACCAGCA 49803 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | || |||||||| ||||||||| |||||||||| | || || | || |||||| | Sbjct 49802 GCGTCTGATCTTCGCTGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACAT 49743 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTT 206379 |||||||||||| || || ||| | ||| Sbjct 49742 CCAGAAAGAGTCCACCCTCCACTTGGTT 49715 Score = 87.8 bits (96), Expect = 4e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 204763 AACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTC 204822 ||| | ||| || || ||||||||||||| || ||||||| || || | |||||||| Sbjct 39080 AACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTC 39139 Query 204823 CAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 ||||||||||||||||||||| || || || || Sbjct 39140 CAGCTGCTTTCCGGCGAAGATCAGACGCTGCTG 39172 Score = 87.8 bits (96), Expect = 4e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| ||||| || || || ||| || | || ||||||||||||||| Sbjct 39575 AAGATCCAAGACAAAGAGGGCATCCCACCAGACCAGCAGCGTCTGATCTTCGCCGGAAAG 39516 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||||||||| | || || | || |||||| ||||||||||||| || || ||| Sbjct 39515 CAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACATCCAGAAAGAGTCCACACTCCAC 39456 Query 206374 CTTGTT 206379 | ||| Sbjct 39455 TTGGTT 39450 Score = 87.8 bits (96), Expect = 4e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 204763 AACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTC 204822 ||| | ||| || || ||||||||||||| || ||||||| || || | |||||||| Sbjct 39450 AACCAAGTGGAGTGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTC 39509 Query 204823 CAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 ||||||||||||||||||||| || || || || Sbjct 39510 CAGCTGCTTTCCGGCGAAGATCAGACGCTGCTG 39542 Score = 87.8 bits (96), Expect = 4e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 204763 AACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTC 204822 ||| | ||| || || ||||||||||||| || ||||||| || || | |||||||| Sbjct 40092 AACCAAGTGGAGTGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTC 40151 Query 204823 CAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 ||||||||||||||||||||| || || || || Sbjct 40152 CAGCTGCTTTCCGGCGAAGATCAGACGCTGCTG 40184 Score = 84.2 bits (92), Expect = 5e-11 Identities = 138/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGA---AAGTTCT 206229 ||||| || ||| || || || || || || || ||| | || || || |||| Sbjct 39842 CAGATCTTCGTCAAGACCCTGACGGGTAAGACCATTACTCTTGAGGTCGAGCCAAGT--- 39786 Query 206230 GACACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGC 206288 ||||| |||| || ||||| || ||| ||||| ||||| || || || ||| Sbjct 39785 GACACCATCGAGAATGTCAAAGCCAA-GATCCAAGACAAAGAGGGCATCCCACCAGACCA 39727 Query 206289 TCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAA 206348 || | || |||||||||||||||||| |||||||||| | || || | || ||||| Sbjct 39726 GCAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAA 39667 Query 206349 CGTCCAGAAAGAGTC 206363 | ||||||||||||| Sbjct 39666 CATCCAGAAAGAGTC 39652 >seq3742 Length=77992 Score = 98.7 bits (108), Expect = 2e-15 Identities = 148/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || || ||||| || || |||||| | || || || |||| Sbjct 33023 CAGATCTTCGTCAAGACCCTGACAGGTAAGACCATCACTCTTGAGGTCGAGCCCAGTGAC 33082 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || |||| || ||||| ||| || ||||| ||||| || || || ||| || Sbjct 33083 ACCATCGAGAATGTCAAAGCCAAA-ATCCAAGACAAAGAGGGCATCCCACCAGACCAGCA 33141 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | || |||||||||||||||||| |||||||||| | || || | || |||||| | Sbjct 33142 GCGTCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACAT 33201 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTT 206379 |||||||||||| || || ||| | ||| Sbjct 33202 CCAGAAAGAGTCCACACTCCACTTGGTT 33229 Score = 98.7 bits (108), Expect = 2e-15 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | ||||| ||||| ||||| | || || || |||| Sbjct 33251 CAGATCTTCGTCAAGACCTTGACAGGCAAAACCATCACCCTTGAGGTCGAGCCCAGTGAC 33310 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| ||||| ||||| || || || ||| || Sbjct 33311 ACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCAGCAG 33370 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || |||||||||||||||||| |||||||||| | || || | || |||||| || Sbjct 33371 CGTCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACATC 33430 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTT 206379 ||||||||||| || || ||||| ||| Sbjct 33431 CAGAAAGAGTCCACCCTCCACCTGGTT 33457 Score = 93.3 bits (102), Expect = 1e-13 Identities = 147/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || || ||||| || || |||||| | || || || |||| Sbjct 32795 CAGATCTTCGTCAAGACCCTGACAGGCAAGACCATCACTCTCGAGGTCGAGCCCAGTGAC 32854 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || |||| || ||||| || ||| ||||| ||||| || || || ||| || Sbjct 32855 ACCATCGAGAATGTCAAAGCCAA-GATCCAAGACAAAGAGGGCATCCCACCAGACCAGCA 32913 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | || ||||| |||||||||||| |||||||||| | || || | || |||||| | Sbjct 32914 GCGTCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACAT 32973 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTT 206379 |||||||||||| || || ||| | ||| Sbjct 32974 CCAGAAAGAGTCCACACTCCACTTGGTT 33001 Score = 91.5 bits (100), Expect = 3e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 204763 AACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTC 204822 ||| ||||| || || ||||||||||||| || ||||||| || || | |||||||| Sbjct 33457 AACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTC 33398 Query 204823 CAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 ||||||||||||||||||||| || || || || Sbjct 33397 CAGCTGCTTTCCGGCGAAGATCAGACGCTGCTG 33365 Score = 87.8 bits (96), Expect = 4e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 204763 AACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTC 204822 ||| | ||| || || ||||||||||||| || ||||||| || || | |||||||| Sbjct 33229 AACCAAGTGGAGTGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTC 33170 Query 204823 CAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 ||||||||||||||||||||| || || || || Sbjct 33169 CAGCTGCTTTCCGGCGAAGATCAGACGCTGCTG 33137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1180909504259543