Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq3742 98.7 9e-16 seq9089 96.9 3e-15 seq4762 93.3 4e-14 seq4379 89.7 5e-13 >seq3742 Length=77992 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | || ||| || | || ||||||||||| || || || Sbjct 33439 CTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCGAA 33380 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| | || | || ||| ||||| |||||| ||| | | | Sbjct 33379 GATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATT 33320 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||| | ||||| ||||| || ||||| || || || Sbjct 33319 CTCGATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTTTTGCCTGTCAAGGTCTTGAC 33260 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 33259 GAAGATCTGCAT 33248 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | || ||| || | || ||||||||||| || ||||| Sbjct 32983 CTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAA 32924 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| | || | || ||| ||||| |||||| || | | | Sbjct 32923 GATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGATCTTGGCTTTGACATT 32864 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||| | ||||| || || || |||| || || || Sbjct 32863 CTCGATGGTGTCACTGGGCTCGACCTCGAGAGTGATGGTCTTGCCTGTCAGGGTCTTGAC 32804 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 32803 GAAGATCTGCAT 32792 Score = 89.7 bits (98), Expect = 5e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | || ||| || | || ||||||||||| || || || Sbjct 33211 CTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCGAA 33152 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAG 35663 |||| ||||||||||| | || | || ||| ||||| ||| ||| || || | | Sbjct 33151 GATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGAT-TTTGGCTTTGACAT 33093 Query 35664 TTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 | | | ||||| || | || ||||| | ||||| || ||||| |||| || || | Sbjct 33092 TCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTACCTGTCAGGGTCTTGA 33033 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 33032 CGAAGATCTGCAT 33020 >seq9089 Length=72386 Score = 96.9 bits (106), Expect = 3e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || || || | ||||| ||||| || | ||| |||||| || |||||||| |||| Sbjct 52168 CCGCCCCGCAGCCTCAGCACCAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGAG 52109 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || |||| ||||||||||| || ||||| |||| || ||||||||| | || Sbjct 52108 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGCGGG 52049 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || ||||||||| |||||| ||| | | | | | |||||||| | || ||| Sbjct 52048 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCGCTGGGCTCAACC 51989 Query 35690 T 35690 | Sbjct 51988 T 51988 >seq4762 Length=92317 Score = 93.3 bits (102), Expect = 4e-14 Identities = 129/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || || || | ||||| ||||| || | ||| |||||| || |||||||| |||| Sbjct 80963 CCGCCCCGCAGCCTCAGCACCAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGAG 80904 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || |||| ||||||||||| || || || |||| || ||||||||| | || Sbjct 80903 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGCGGG 80844 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || ||||||||| |||||| ||| | | | | | |||||||| | || ||| Sbjct 80843 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCGCTGGGCTCAACC 80784 Query 35690 T 35690 | Sbjct 80783 T 80783 >seq4379 Length=69586 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | || ||| || | || ||||||||||| || || || Sbjct 39098 CTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCGAA 39157 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| | || | || ||| ||||| |||||| ||| | | | Sbjct 39158 GATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATT 39217 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||| | ||||| || || || |||| || || || Sbjct 39218 CTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTGCCTGTCAGGGTCTTGAC 39277 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 39278 GAAGATCTGCAT 39289 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | || ||| || | || ||||||||||| || || || Sbjct 39654 CTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCGAA 39713 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| | || | || ||| ||||| |||||| || | | | Sbjct 39714 GATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGATCTTGGCTTTGACATT 39773 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||| | || || || |||||||||| || || || Sbjct 39774 CTCGATGGTGTCACTTGGCTCGACCTCAAGAGTAATGGTCTTACCCGTCAGGGTCTTGAC 39833 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 39834 GAAGATCTGCAT 39845 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | || ||| || | || ||||||||||| || || || Sbjct 40110 CTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCGAA 40169 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| | || | || ||| ||||| |||||| || | | | Sbjct 40170 GATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGATCTTGGCTTTGACATT 40229 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||| | ||||| || || || |||| || || || Sbjct 40230 CTCGATGGTGTCACTGGGCTCGACCTCGAGAGTGATGGTCTTGCCTGTCAGGGTCTTGAC 40289 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 40290 GAAGATCTGCAT 40301 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | || ||| || | || ||||||||||| || || || Sbjct 49733 CTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCAGCGAA 49792 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| | || | || ||| ||||| |||||| || | | | Sbjct 49793 GATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGATCTTGGCTTTGACATT 49852 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||| | ||||| || || || |||| || || || Sbjct 49853 CTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTGCCTGTCAGGGTCTTGAC 49912 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 49913 GAAGATCTGCAT 49924 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 35542 ACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGC 35601 |||||| | |||| ||||||| || | || ||| || | || ||||||||| | | || Sbjct 49504 ACTCTC-TCTTGA-TGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCATTACGGC 49561 Query 35602 AAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAG 35661 ||| |||| |||||||||| | || | || ||| ||||| |||||| ||| | Sbjct 49562 AAAAATCAGATGCTGCTGGTCTGGTGGGATGCCCTCGTTGTCTTGGATCTTGGCCTTGAC 49621 Query 35662 AGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | | ||||| || | || ||||| | || || || ||||||||||| || || Sbjct 49622 ATTCTTGATGGTGTCACTTGGCTCGACCTCAAGGGTAATGGTCTTACCCGTCAAGGTCTT 49681 Query 35722 CACAAATATCTGCAT 35736 || || |||||||| Sbjct 49682 GACGAAGATCTGCAT 49696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450454473609640