Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2645 104 3e-17 seq937 89.7 7e-13 >seq2645 Length=46952 Score = 104 bits (114), Expect = 3e-17 Identities = 109/140 (78%), Gaps = 5/140 (4%) Strand=Plus/Minus Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||||||||| || ||||| ||||| || |||||||||||||| ||||| || |||||| Sbjct 14798 AGCCAAAATATAGCTGCAAATGATCCCGAGAAGAAGATGCCTTCCACTGCAGCGAATGCA 14739 Query 39761 ACAAGTCTCTCTCCGTAACTTGTATCATT---ATGTATCCA-CTTCTGTGCCCAATCAGC 39816 || ||||||||||| | | | || || ||| ||||| | || ||||| ||||| Sbjct 14738 ACGAGTCTCTCTCCAAATGTAGCTTCCTTGGCATGAATCCATCGAATG-GCCCAGTCAGC 14680 Query 39817 TTTCTTCTTTACACAAGGCA 39836 ||||||||| | || |||| Sbjct 14679 TTTCTTCTTGATGCATGGCA 14660 >seq937 Length=97168 Score = 89.7 bits (98), Expect = 7e-13 Identities = 190/284 (67%), Gaps = 0/284 (0%) Strand=Plus/Plus Query 39887 TATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAAT 39946 || || || || |||| || ||||| ||||| || ||||| || || || ||||| || Sbjct 94004 TAGGTGTCGATCAACAAGCTGTACATCTCTGAGTGAATGTTCTCGATGGCGATCTGGAAC 94063 Query 39947 CCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTT 40006 ||||| || || | || || | | || ||||| | || | ||| | | || Sbjct 94064 CCGTAGAAGCACCGCGCCTCCGGCACCTGAACCTCCTGGCTGAACCGCTCCACGAGGTTC 94123 Query 40007 TCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTT 40066 || ||||| || || || || ||||| || || ||||| || || || || | | Sbjct 94124 TCGTTCACGATGCCGTCGCTGGCGGCGAAGAAGGCCAAGACGTGGGAGATGAAGTGCCTC 94183 Query 40067 TCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCT 40126 ||||| || | | | |||||| || || || || | || || || || | Sbjct 94184 TCATCCGGCTTGAGGGACTCCCAGTCTGGGAGGTCCTTGGAGAGGTCGACCTCCTCGACC 94243 Query 40127 GTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATC 40170 ||||| ||||||||||||||||| |||||||||| ||| || || Sbjct 94244 GTCCAGAACGACGCCTCTGCCTTCTTGTACATGTCCCAGATGTC 94287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686392047096120